Date: 2016-07-24T16:54:19+00:00

Actual source code: mpiaijcusparse.cu
petsc-3.7.3 2016-07-24
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      1: #define PETSC_SKIP_SPINLOCK

      3: #include <petscconf.h>
      4: #include <../src/mat/impls/aij/mpi/mpiaij.h>   /*I "petscmat.h" I*/
      5: #include <../src/mat/impls/aij/mpi/mpicusparse/mpicusparsematimpl.h>

     10: PetscErrorCode  MatMPIAIJSetPreallocation_MPIAIJCUSPARSE(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
     11: {
     12:   Mat_MPIAIJ         *b               = (Mat_MPIAIJ*)B->data;
     13:   Mat_MPIAIJCUSPARSE * cusparseStruct = (Mat_MPIAIJCUSPARSE*)b->spptr;
     14:   PetscErrorCode     ierr;
     15:   PetscInt           i;

     18:   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
     19:   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
     20:   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
     21:   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);

     23:   PetscLayoutSetUp(B->rmap);
     24:   PetscLayoutSetUp(B->cmap);
     25:   if (d_nnz) {
     26:     for (i=0; i<B->rmap->n; i++) {
     27:       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %D value %D",i,d_nnz[i]);
     28:     }
     29:   }
     30:   if (o_nnz) {
     31:     for (i=0; i<B->rmap->n; i++) {
     32:       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %D value %D",i,o_nnz[i]);
     33:     }
     34:   }
     35:   if (!B->preallocated) {
     36:     /* Explicitly create 2 MATSEQAIJCUSPARSE matrices. */
     37:     MatCreate(PETSC_COMM_SELF,&b->A);
     38:     MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);
     39:     MatSetType(b->A,MATSEQAIJCUSPARSE);
     40:     PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);
     41:     MatCreate(PETSC_COMM_SELF,&b->B);
     42:     MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);
     43:     MatSetType(b->B,MATSEQAIJCUSPARSE);
     44:     PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);
     45:   }
     46:   MatSeqAIJSetPreallocation(b->A,d_nz,d_nnz);
     47:   MatSeqAIJSetPreallocation(b->B,o_nz,o_nnz);
     48:   MatCUSPARSESetFormat(b->A,MAT_CUSPARSE_MULT,cusparseStruct->diagGPUMatFormat);
     49:   MatCUSPARSESetFormat(b->B,MAT_CUSPARSE_MULT,cusparseStruct->offdiagGPUMatFormat);
     50:   MatCUSPARSESetHandle(b->A,cusparseStruct->handle);
     51:   MatCUSPARSESetHandle(b->B,cusparseStruct->handle);
     52:   MatCUSPARSESetStream(b->A,cusparseStruct->stream);
     53:   MatCUSPARSESetStream(b->B,cusparseStruct->stream);

     55:   B->preallocated = PETSC_TRUE;
     56:   return(0);
     57: }

     61: PetscErrorCode  MatCreateVecs_MPIAIJCUSPARSE(Mat mat,Vec *right,Vec *left)
     62: {
     64:   PetscInt rbs,cbs;

     67:   MatGetBlockSizes(mat,&rbs,&cbs);
     68:   if (right) {
     69:     VecCreate(PetscObjectComm((PetscObject)mat),right);
     70:     VecSetSizes(*right,mat->cmap->n,PETSC_DETERMINE);
     71:     VecSetBlockSize(*right,cbs);
     72:     VecSetType(*right,VECCUDA);
     73:     VecSetLayout(*right,mat->cmap);
     74:   }
     75:   if (left) {
     76:     VecCreate(PetscObjectComm((PetscObject)mat),left);
     77:     VecSetSizes(*left,mat->rmap->n,PETSC_DETERMINE);
     78:     VecSetBlockSize(*left,rbs);
     79:     VecSetType(*left,VECCUDA);
     80:     VecSetLayout(*left,mat->rmap);

     83:   }
     84:   return(0);
     85: }

     90: PetscErrorCode MatMult_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy)
     91: {
     92:   /* This multiplication sequence is different sequence
     93:      than the CPU version. In particular, the diagonal block
     94:      multiplication kernel is launched in one stream. Then,
     95:      in a separate stream, the data transfers from DeviceToHost
     96:      (with MPI messaging in between), then HostToDevice are
     97:      launched. Once the data transfer stream is synchronized,
     98:      to ensure messaging is complete, the MatMultAdd kernel
     99:      is launched in the original (MatMult) stream to protect
    100:      against race conditions.

    102:      This sequence should only be called for GPU computation. */
    103:   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
    105:   PetscInt       nt;

    108:   VecGetLocalSize(xx,&nt);
    109:   if (nt != A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->cmap->n,nt);
    110:   VecScatterInitializeForGPU(a->Mvctx,xx,SCATTER_FORWARD);
    111:   (*a->A->ops->mult)(a->A,xx,yy);
    112:   VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);
    113:   VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);
    114:   (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);
    115:   VecScatterFinalizeForGPU(a->Mvctx);
    116:   return(0);
    117: }

    121: PetscErrorCode MatMultTranspose_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy)
    122: {
    123:   /* This multiplication sequence is different sequence
    124:      than the CPU version. In particular, the diagonal block
    125:      multiplication kernel is launched in one stream. Then,
    126:      in a separate stream, the data transfers from DeviceToHost
    127:      (with MPI messaging in between), then HostToDevice are
    128:      launched. Once the data transfer stream is synchronized,
    129:      to ensure messaging is complete, the MatMultAdd kernel
    130:      is launched in the original (MatMult) stream to protect
    131:      against race conditions.

    133:      This sequence should only be called for GPU computation. */
    134:   Mat_MPIAIJ     *a = (Mat_MPIAIJ*)A->data;
    136:   PetscInt       nt;

    139:   VecGetLocalSize(xx,&nt);
    140:   if (nt != A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->cmap->n,nt);
    141:   VecScatterInitializeForGPU(a->Mvctx,xx,SCATTER_FORWARD);
    142:   (*a->A->ops->multtranspose)(a->A,xx,yy);
    143:   VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);
    144:   VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);
    145:   (*a->B->ops->multtransposeadd)(a->B,a->lvec,yy,yy);
    146:   VecScatterFinalizeForGPU(a->Mvctx);
    147:   return(0);
    148: }

    152: PetscErrorCode MatCUSPARSESetFormat_MPIAIJCUSPARSE(Mat A,MatCUSPARSEFormatOperation op,MatCUSPARSEStorageFormat format)
    153: {
    154:   Mat_MPIAIJ         *a               = (Mat_MPIAIJ*)A->data;
    155:   Mat_MPIAIJCUSPARSE * cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr;

    158:   switch (op) {
    159:   case MAT_CUSPARSE_MULT_DIAG:
    160:     cusparseStruct->diagGPUMatFormat = format;
    161:     break;
    162:   case MAT_CUSPARSE_MULT_OFFDIAG:
    163:     cusparseStruct->offdiagGPUMatFormat = format;
    164:     break;
    165:   case MAT_CUSPARSE_ALL:
    166:     cusparseStruct->diagGPUMatFormat    = format;
    167:     cusparseStruct->offdiagGPUMatFormat = format;
    168:     break;
    169:   default:
    170:     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unsupported operation %d for MatCUSPARSEFormatOperation. Only MAT_CUSPARSE_MULT_DIAG, MAT_CUSPARSE_MULT_DIAG, and MAT_CUSPARSE_MULT_ALL are currently supported.",op);
    171:   }
    172:   return(0);
    173: }

    177: PetscErrorCode MatSetFromOptions_MPIAIJCUSPARSE(PetscOptionItems *PetscOptionsObject,Mat A)
    178: {
    179:   MatCUSPARSEStorageFormat format;
    180:   PetscErrorCode           ierr;
    181:   PetscBool                flg;
    182:   Mat_MPIAIJ               *a = (Mat_MPIAIJ*)A->data;
    183:   Mat_MPIAIJCUSPARSE       *cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr;

    186:   PetscOptionsHead(PetscOptionsObject,"MPIAIJCUSPARSE options");
    187:   PetscObjectOptionsBegin((PetscObject)A);
    188:   if (A->factortype==MAT_FACTOR_NONE) {
    189:     PetscOptionsEnum("-mat_cusparse_mult_diag_storage_format","sets storage format of the diagonal blocks of (mpi)aijcusparse gpu matrices for SpMV",
    190:                             "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)cusparseStruct->diagGPUMatFormat,(PetscEnum*)&format,&flg);
    191:     if (flg) {
    192:       MatCUSPARSESetFormat(A,MAT_CUSPARSE_MULT_DIAG,format);
    193:     }
    194:     PetscOptionsEnum("-mat_cusparse_mult_offdiag_storage_format","sets storage format of the off-diagonal blocks (mpi)aijcusparse gpu matrices for SpMV",
    195:                             "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)cusparseStruct->offdiagGPUMatFormat,(PetscEnum*)&format,&flg);
    196:     if (flg) {
    197:       MatCUSPARSESetFormat(A,MAT_CUSPARSE_MULT_OFFDIAG,format);
    198:     }
    199:     PetscOptionsEnum("-mat_cusparse_storage_format","sets storage format of the diagonal and off-diagonal blocks (mpi)aijcusparse gpu matrices for SpMV",
    200:                             "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)cusparseStruct->diagGPUMatFormat,(PetscEnum*)&format,&flg);
    201:     if (flg) {
    202:       MatCUSPARSESetFormat(A,MAT_CUSPARSE_ALL,format);
    203:     }
    204:   }
    205:   PetscOptionsEnd();
    206:   return(0);
    207: }

    211: PetscErrorCode MatDestroy_MPIAIJCUSPARSE(Mat A)
    212: {
    213:   PetscErrorCode     ierr;
    214:   Mat_MPIAIJ         *a              = (Mat_MPIAIJ*)A->data;
    215:   Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr;
    216:   cudaError_t        err;
    217:   cusparseStatus_t   stat;

    220:   try {
    221:     MatCUSPARSEClearHandle(a->A);
    222:     MatCUSPARSEClearHandle(a->B);
    223:     stat = cusparseDestroy(cusparseStruct->handle);CHKERRCUDA(stat);
    224:     err = cudaStreamDestroy(cusparseStruct->stream);CHKERRCUDA(err);
    225:     delete cusparseStruct;
    226:   } catch(char *ex) {
    227:     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Mat_MPIAIJCUSPARSE error: %s", ex);
    228:   }
    229:   cusparseStruct = 0;

    231:   MatDestroy_MPIAIJ(A);
    232:   return(0);
    233: }

    237: PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJCUSPARSE(Mat A)
    238: {
    239:   PetscErrorCode     ierr;
    240:   Mat_MPIAIJ         *a;
    241:   Mat_MPIAIJCUSPARSE * cusparseStruct;
    242:   cudaError_t        err;
    243:   cusparseStatus_t   stat;

    246:   MatCreate_MPIAIJ(A);
    247:   PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJCUSPARSE);
    248:   a        = (Mat_MPIAIJ*)A->data;
    249:   a->spptr = new Mat_MPIAIJCUSPARSE;

    251:   cusparseStruct                      = (Mat_MPIAIJCUSPARSE*)a->spptr;
    252:   cusparseStruct->diagGPUMatFormat    = MAT_CUSPARSE_CSR;
    253:   cusparseStruct->offdiagGPUMatFormat = MAT_CUSPARSE_CSR;
    254:   stat = cusparseCreate(&(cusparseStruct->handle));CHKERRCUDA(stat);
    255:   err = cudaStreamCreate(&(cusparseStruct->stream));CHKERRCUDA(err);

    257:   A->ops->getvecs        = MatCreateVecs_MPIAIJCUSPARSE;
    258:   A->ops->mult           = MatMult_MPIAIJCUSPARSE;
    259:   A->ops->multtranspose  = MatMultTranspose_MPIAIJCUSPARSE;
    260:   A->ops->setfromoptions = MatSetFromOptions_MPIAIJCUSPARSE;
    261:   A->ops->destroy        = MatDestroy_MPIAIJCUSPARSE;

    263:   PetscObjectChangeTypeName((PetscObject)A,MATMPIAIJCUSPARSE);
    264:   PetscObjectComposeFunction((PetscObject)A,"MatCUSPARSESetFormat_C",  MatCUSPARSESetFormat_MPIAIJCUSPARSE);
    265:   return(0);
    266: }

    268: /*@
    269:    MatCreateAIJCUSPARSE - Creates a sparse matrix in AIJ (compressed row) format
    270:    (the default parallel PETSc format).  This matrix will ultimately pushed down
    271:    to NVidia GPUs and use the CUSPARSE library for calculations. For good matrix
    272:    assembly performance the user should preallocate the matrix storage by setting
    273:    the parameter nz (or the array nnz).  By setting these parameters accurately,
    274:    performance during matrix assembly can be increased by more than a factor of 50.

    276:    Collective on MPI_Comm

    278:    Input Parameters:
    279: +  comm - MPI communicator, set to PETSC_COMM_SELF
    280: .  m - number of rows
    281: .  n - number of columns
    282: .  nz - number of nonzeros per row (same for all rows)
    283: -  nnz - array containing the number of nonzeros in the various rows
    284:          (possibly different for each row) or NULL

    286:    Output Parameter:
    287: .  A - the matrix

    289:    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
    290:    MatXXXXSetPreallocation() paradigm instead of this routine directly.
    291:    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]

    293:    Notes:
    294:    If nnz is given then nz is ignored

    296:    The AIJ format (also called the Yale sparse matrix format or
    297:    compressed row storage), is fully compatible with standard Fortran 77
    298:    storage.  That is, the stored row and column indices can begin at
    299:    either one (as in Fortran) or zero.  See the users' manual for details.

    301:    Specify the preallocated storage with either nz or nnz (not both).
    302:    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
    303:    allocation.  For large problems you MUST preallocate memory or you
    304:    will get TERRIBLE performance, see the users' manual chapter on matrices.

    306:    By default, this format uses inodes (identical nodes) when possible, to
    307:    improve numerical efficiency of matrix-vector products and solves. We
    308:    search for consecutive rows with the same nonzero structure, thereby
    309:    reusing matrix information to achieve increased efficiency.

    311:    Level: intermediate

    313: .seealso: MatCreate(), MatCreateAIJ(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJCUSPARSE, MATAIJCUSPARSE
    314: @*/
    317: PetscErrorCode  MatCreateAIJCUSPARSE(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
    318: {
    320:   PetscMPIInt    size;

    323:   MatCreate(comm,A);
    324:   MatSetSizes(*A,m,n,M,N);
    325:   MPI_Comm_size(comm,&size);
    326:   if (size > 1) {
    327:     MatSetType(*A,MATMPIAIJCUSPARSE);
    328:     MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);
    329:   } else {
    330:     MatSetType(*A,MATSEQAIJCUSPARSE);
    331:     MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);
    332:   }
    333:   return(0);
    334: }

    336: /*M
    337:    MATAIJCUSPARSE - MATMPIAIJCUSPARSE = "aijcusparse" = "mpiaijcusparse" - A matrix type to be used for sparse matrices.

    339:    A matrix type type whose data resides on Nvidia GPUs. These matrices can be in either
    340:    CSR, ELL, or Hybrid format. The ELL and HYB formats require CUDA 4.2 or later.
    341:    All matrix calculations are performed on Nvidia GPUs using the CUSPARSE library.

    343:    This matrix type is identical to MATSEQAIJCUSPARSE when constructed with a single process communicator,
    344:    and MATMPIAIJCUSPARSE otherwise.  As a result, for single process communicators,
    345:    MatSeqAIJSetPreallocation is supported, and similarly MatMPIAIJSetPreallocation is supported
    346:    for communicators controlling multiple processes.  It is recommended that you call both of
    347:    the above preallocation routines for simplicity.

    349:    Options Database Keys:
    350: +  -mat_type mpiaijcusparse - sets the matrix type to "mpiaijcusparse" during a call to MatSetFromOptions()
    351: .  -mat_cusparse_storage_format csr - sets the storage format of diagonal and off-diagonal matrices during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid).
    352: .  -mat_cusparse_mult_diag_storage_format csr - sets the storage format of diagonal matrix during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid).
    353: -  -mat_cusparse_mult_offdiag_storage_format csr - sets the storage format of off-diagonal matrix during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid).

    355:   Level: beginner

    357:  .seealso: MatCreateAIJCUSPARSE(), MATSEQAIJCUSPARSE, MatCreateSeqAIJCUSPARSE(), MatCUSPARSESetFormat(), MatCUSPARSEStorageFormat, MatCUSPARSEFormatOperation
    358: M
    359: M*/