Date: 2016-07-24T16:50:08+00:00

Actual source code: vecnest.c
petsc-3.7.3 2016-07-24
Report Typos and Errors

      2: #include <../src/vec/vec/impls/nest/vecnestimpl.h>   /*I  "petscvec.h"   I*/

      4: /* check all blocks are filled */
      7: static PetscErrorCode VecAssemblyBegin_Nest(Vec v)
      8: {
      9:   Vec_Nest       *vs = (Vec_Nest*)v->data;
     10:   PetscInt       i;

     14:   for (i=0; i<vs->nb; i++) {
     15:     if (!vs->v[i]) SETERRQ(PetscObjectComm((PetscObject)v),PETSC_ERR_SUP,"Nest  vector cannot contain NULL blocks");
     16:     VecAssemblyBegin(vs->v[i]);
     17:   }
     18:   return(0);
     19: }

     23: static PetscErrorCode VecAssemblyEnd_Nest(Vec v)
     24: {
     25:   Vec_Nest       *vs = (Vec_Nest*)v->data;
     26:   PetscInt       i;

     30:   for (i=0; i<vs->nb; i++) {
     31:     VecAssemblyEnd(vs->v[i]);
     32:   }
     33:   return(0);
     34: }

     38: static PetscErrorCode VecDestroy_Nest(Vec v)
     39: {
     40:   Vec_Nest       *vs = (Vec_Nest*)v->data;
     41:   PetscInt       i;

     45:   if (vs->v) {
     46:     for (i=0; i<vs->nb; i++) {
     47:       VecDestroy(&vs->v[i]);
     48:     }
     49:     PetscFree(vs->v);
     50:   }
     51:   for (i=0; i<vs->nb; i++) {
     52:     ISDestroy(&vs->is[i]);
     53:   }
     54:   PetscFree(vs->is);
     55:   PetscObjectComposeFunction((PetscObject)v,"",NULL);
     56:   PetscObjectComposeFunction((PetscObject)v,"",NULL);
     57:   PetscObjectComposeFunction((PetscObject)v,"",NULL);
     58:   PetscObjectComposeFunction((PetscObject)v,"",NULL);
     59:   PetscObjectComposeFunction((PetscObject)v,"",NULL);

     61:   PetscFree(vs);
     62:   return(0);
     63: }

     65: /* supports nested blocks */
     68: static PetscErrorCode VecCopy_Nest(Vec x,Vec y)
     69: {
     70:   Vec_Nest       *bx = (Vec_Nest*)x->data;
     71:   Vec_Nest       *by = (Vec_Nest*)y->data;
     72:   PetscInt       i;

     76:   VecNestCheckCompatible2(x,1,y,2);
     77:   for (i=0; i<bx->nb; i++) {
     78:     VecCopy(bx->v[i],by->v[i]);
     79:   }
     80:   return(0);
     81: }

     83: /* supports nested blocks */
     86: static PetscErrorCode VecDuplicate_Nest(Vec x,Vec *y)
     87: {
     88:   Vec_Nest       *bx = (Vec_Nest*)x->data;
     89:   Vec            Y;
     90:   Vec            *sub;
     91:   PetscInt       i;

     95:   PetscMalloc(sizeof(Vec)*bx->nb,&sub);
     96:   for (i=0; i<bx->nb; i++) {
     97:     VecDuplicate(bx->v[i],&sub[i]);
     98:   }
     99:   VecCreateNest(PetscObjectComm((PetscObject)x),bx->nb,bx->is,sub,&Y);
    100:   for (i=0; i<bx->nb; i++) {
    101:     VecDestroy(&sub[i]);
    102:   }
    103:   PetscFree(sub);
    104:   *y   = Y;
    105:   return(0);
    106: }

    108: /* supports nested blocks */
    111: static PetscErrorCode VecDot_Nest(Vec x,Vec y,PetscScalar *val)
    112: {
    113:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    114:   Vec_Nest       *by = (Vec_Nest*)y->data;
    115:   PetscInt       i,nr;
    116:   PetscScalar    x_dot_y,_val;

    120:   nr   = bx->nb;
    121:   _val = 0.0;
    122:   for (i=0; i<nr; i++) {
    123:     VecDot(bx->v[i],by->v[i],&x_dot_y);
    124:     _val = _val + x_dot_y;
    125:   }
    126:   *val = _val;
    127:   return(0);
    128: }

    130: /* supports nested blocks */
    133: static PetscErrorCode VecTDot_Nest(Vec x,Vec y,PetscScalar *val)
    134: {
    135:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    136:   Vec_Nest       *by = (Vec_Nest*)y->data;
    137:   PetscInt       i,nr;
    138:   PetscScalar    x_dot_y,_val;

    142:   nr   = bx->nb;
    143:   _val = 0.0;
    144:   for (i=0; i<nr; i++) {
    145:     VecTDot(bx->v[i],by->v[i],&x_dot_y);
    146:     _val = _val + x_dot_y;
    147:   }
    148:   *val = _val;
    149:   return(0);
    150: }

    154: static PetscErrorCode VecDotNorm2_Nest(Vec x,Vec y,PetscScalar *dp, PetscScalar *nm)
    155: {
    156:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    157:   Vec_Nest       *by = (Vec_Nest*)y->data;
    158:   PetscInt       i,nr;
    159:   PetscScalar    x_dot_y,_dp,_nm;
    160:   PetscReal      norm2_y;

    164:   nr  = bx->nb;
    165:   _dp = 0.0;
    166:   _nm = 0.0;
    167:   for (i=0; i<nr; i++) {
    168:     VecDotNorm2(bx->v[i],by->v[i],&x_dot_y,&norm2_y);
    169:     _dp += x_dot_y;
    170:     _nm += norm2_y;
    171:   }
    172:   *dp = _dp;
    173:   *nm = _nm;
    174:   return(0);
    175: }

    179: static PetscErrorCode VecAXPY_Nest(Vec y,PetscScalar alpha,Vec x)
    180: {
    181:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    182:   Vec_Nest       *by = (Vec_Nest*)y->data;
    183:   PetscInt       i,nr;

    187:   nr = bx->nb;
    188:   for (i=0; i<nr; i++) {
    189:     VecAXPY(by->v[i],alpha,bx->v[i]);
    190:   }
    191:   return(0);
    192: }

    196: static PetscErrorCode VecAYPX_Nest(Vec y,PetscScalar alpha,Vec x)
    197: {
    198:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    199:   Vec_Nest       *by = (Vec_Nest*)y->data;
    200:   PetscInt       i,nr;

    204:   nr = bx->nb;
    205:   for (i=0; i<nr; i++) {
    206:     VecAYPX(by->v[i],alpha,bx->v[i]);
    207:   }
    208:   return(0);
    209: }

    213: static PetscErrorCode VecAXPBY_Nest(Vec y,PetscScalar alpha,PetscScalar beta,Vec x)
    214: {
    215:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    216:   Vec_Nest       *by = (Vec_Nest*)y->data;
    217:   PetscInt       i,nr;

    221:   nr = bx->nb;
    222:   for (i=0; i<nr; i++) {
    223:     VecAXPBY(by->v[i],alpha,beta,bx->v[i]);
    224:   }
    225:   return(0);
    226: }

    230: static PetscErrorCode VecScale_Nest(Vec x,PetscScalar alpha)
    231: {
    232:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    233:   PetscInt       i,nr;

    237:   nr = bx->nb;
    238:   for (i=0; i<nr; i++) {
    239:     VecScale(bx->v[i],alpha);
    240:   }
    241:   return(0);
    242: }

    246: static PetscErrorCode VecPointwiseMult_Nest(Vec w,Vec x,Vec y)
    247: {
    248:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    249:   Vec_Nest       *by = (Vec_Nest*)y->data;
    250:   Vec_Nest       *bw = (Vec_Nest*)w->data;
    251:   PetscInt       i,nr;

    255:   VecNestCheckCompatible3(w,1,x,3,y,4);
    256:   nr = bx->nb;
    257:   for (i=0; i<nr; i++) {
    258:     VecPointwiseMult(bw->v[i],bx->v[i],by->v[i]);
    259:   }
    260:   return(0);
    261: }

    265: static PetscErrorCode VecPointwiseDivide_Nest(Vec w,Vec x,Vec y)
    266: {
    267:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    268:   Vec_Nest       *by = (Vec_Nest*)y->data;
    269:   Vec_Nest       *bw = (Vec_Nest*)w->data;
    270:   PetscInt       i,nr;

    274:   VecNestCheckCompatible3(w,1,x,2,y,3);

    276:   nr = bx->nb;
    277:   for (i=0; i<nr; i++) {
    278:     VecPointwiseDivide(bw->v[i],bx->v[i],by->v[i]);
    279:   }
    280:   return(0);
    281: }

    285: static PetscErrorCode VecReciprocal_Nest(Vec x)
    286: {
    287:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    288:   PetscInt       i,nr;

    292:   nr = bx->nb;
    293:   for (i=0; i<nr; i++) {
    294:     VecReciprocal(bx->v[i]);
    295:   }
    296:   return(0);
    297: }

    301: static PetscErrorCode VecNorm_Nest(Vec xin,NormType type,PetscReal *z)
    302: {
    303:   Vec_Nest       *bx = (Vec_Nest*)xin->data;
    304:   PetscInt       i,nr;
    305:   PetscReal      z_i;
    306:   PetscReal      _z;

    310:   nr = bx->nb;
    311:   _z = 0.0;

    313:   if (type == NORM_2) {
    314:     PetscScalar dot;
    315:     VecDot(xin,xin,&dot);
    316:     _z = PetscAbsScalar(PetscSqrtScalar(dot));
    317:   } else if (type == NORM_1) {
    318:     for (i=0; i<nr; i++) {
    319:       VecNorm(bx->v[i],type,&z_i);
    320:       _z = _z + z_i;
    321:     }
    322:   } else if (type == NORM_INFINITY) {
    323:     for (i=0; i<nr; i++) {
    324:       VecNorm(bx->v[i],type,&z_i);
    325:       if (z_i > _z) _z = z_i;
    326:     }
    327:   }

    329:   *z = _z;
    330:   return(0);
    331: }

    335: static PetscErrorCode VecMAXPY_Nest(Vec y,PetscInt nv,const PetscScalar alpha[],Vec *x)
    336: {
    337:   PetscInt       v;

    341:   for (v=0; v<nv; v++) {
    342:     /* Do axpy on each vector,v */
    343:     VecAXPY(y,alpha[v],x[v]);
    344:   }
    345:   return(0);
    346: }

    350: static PetscErrorCode VecMDot_Nest(Vec x,PetscInt nv,const Vec y[],PetscScalar *val)
    351: {
    352:   PetscInt       j;

    356:   for (j=0; j<nv; j++) {
    357:     VecDot(x,y[j],&val[j]);
    358:   }
    359:   return(0);
    360: }

    364: static PetscErrorCode VecMTDot_Nest(Vec x,PetscInt nv,const Vec y[],PetscScalar *val)
    365: {
    366:   PetscInt       j;

    370:   for (j=0; j<nv; j++) {
    371:     VecTDot(x,y[j],&val[j]);
    372:   }
    373:   return(0);
    374: }

    378: static PetscErrorCode VecSet_Nest(Vec x,PetscScalar alpha)
    379: {
    380:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    381:   PetscInt       i,nr;

    385:   nr = bx->nb;
    386:   for (i=0; i<nr; i++) {
    387:     VecSet(bx->v[i],alpha);
    388:   }
    389:   return(0);
    390: }

    394: static PetscErrorCode VecConjugate_Nest(Vec x)
    395: {
    396:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    397:   PetscInt       j,nr;

    401:   nr = bx->nb;
    402:   for (j=0; j<nr; j++) {
    403:     VecConjugate(bx->v[j]);
    404:   }
    405:   return(0);
    406: }

    410: static PetscErrorCode VecSwap_Nest(Vec x,Vec y)
    411: {
    412:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    413:   Vec_Nest       *by = (Vec_Nest*)y->data;
    414:   PetscInt       i,nr;

    418:   VecNestCheckCompatible2(x,1,y,2);
    419:   nr = bx->nb;
    420:   for (i=0; i<nr; i++) {
    421:     VecSwap(bx->v[i],by->v[i]);
    422:   }
    423:   return(0);
    424: }

    428: static PetscErrorCode VecWAXPY_Nest(Vec w,PetscScalar alpha,Vec x,Vec y)
    429: {
    430:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    431:   Vec_Nest       *by = (Vec_Nest*)y->data;
    432:   Vec_Nest       *bw = (Vec_Nest*)w->data;
    433:   PetscInt       i,nr;

    437:   VecNestCheckCompatible3(w,1,x,3,y,4);

    439:   nr = bx->nb;
    440:   for (i=0; i<nr; i++) {
    441:     VecWAXPY(bw->v[i],alpha,bx->v[i],by->v[i]);
    442:   }
    443:   return(0);
    444: }

    448: static PetscErrorCode VecMax_Nest_Recursive(Vec x,PetscInt *cnt,PetscInt *p,PetscReal *max)
    449: {
    450:   Vec_Nest       *bx;
    451:   PetscInt       i,nr;
    452:   PetscBool      isnest;
    453:   PetscInt       L;
    454:   PetscInt       _entry_loc;
    455:   PetscReal      _entry_val;

    459:   PetscObjectTypeCompare((PetscObject)x,VECNEST,&isnest);
    460:   if (!isnest) {
    461:     /* Not nest */
    462:     VecMax(x,&_entry_loc,&_entry_val);
    463:     if (_entry_val > *max) {
    464:       *max = _entry_val;
    465:       *p   = _entry_loc + *cnt;
    466:     }
    467:     VecGetSize(x,&L);
    468:     *cnt = *cnt + L;
    469:     return(0);
    470:   }

    472:   /* Otherwise we have a nest */
    473:   bx = (Vec_Nest*)x->data;
    474:   nr = bx->nb;

    476:   /* now descend recursively */
    477:   for (i=0; i<nr; i++) {
    478:     VecMax_Nest_Recursive(bx->v[i],cnt,p,max);
    479:   }
    480:   return(0);
    481: }

    483: /* supports nested blocks */
    486: static PetscErrorCode VecMax_Nest(Vec x,PetscInt *p,PetscReal *max)
    487: {
    488:   PetscInt       cnt;

    492:   cnt  = 0;
    493:   *p   = 0;
    494:   *max = PETSC_MIN_REAL;
    495:   VecMax_Nest_Recursive(x,&cnt,p,max);
    496:   return(0);
    497: }

    501: static PetscErrorCode VecMin_Nest_Recursive(Vec x,PetscInt *cnt,PetscInt *p,PetscReal *min)
    502: {
    503:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    504:   PetscInt       i,nr,L,_entry_loc;
    505:   PetscBool      isnest;
    506:   PetscReal      _entry_val;

    510:   PetscObjectTypeCompare((PetscObject)x,VECNEST,&isnest);
    511:   if (!isnest) {
    512:     /* Not nest */
    513:     VecMin(x,&_entry_loc,&_entry_val);
    514:     if (_entry_val < *min) {
    515:       *min = _entry_val;
    516:       *p   = _entry_loc + *cnt;
    517:     }
    518:     VecGetSize(x,&L);
    519:     *cnt = *cnt + L;
    520:     return(0);
    521:   }

    523:   /* Otherwise we have a nest */
    524:   nr = bx->nb;

    526:   /* now descend recursively */
    527:   for (i=0; i<nr; i++) {
    528:     VecMin_Nest_Recursive(bx->v[i],cnt,p,min);
    529:   }
    530:   return(0);
    531: }

    535: static PetscErrorCode VecMin_Nest(Vec x,PetscInt *p,PetscReal *min)
    536: {
    537:   PetscInt       cnt;

    541:   cnt  = 0;
    542:   *p   = 0;
    543:   *min = PETSC_MAX_REAL;
    544:   VecMin_Nest_Recursive(x,&cnt,p,min);
    545:   return(0);
    546: }

    548: /* supports nested blocks */
    551: static PetscErrorCode VecView_Nest(Vec x,PetscViewer viewer)
    552: {
    553:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    554:   PetscBool      isascii;
    555:   PetscInt       i;

    559:   PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);
    560:   if (isascii) {
    561:     PetscViewerASCIIPushTab(viewer);
    562:     PetscViewerASCIIPrintf(viewer,"VecNest, rows=%D,  structure: \n",bx->nb);
    563:     for (i=0; i<bx->nb; i++) {
    564:       VecType  type;
    565:       char     name[256] = "",prefix[256] = "";
    566:       PetscInt NR;

    568:       VecGetSize(bx->v[i],&NR);
    569:       VecGetType(bx->v[i],&type);
    570:       if (((PetscObject)bx->v[i])->name) {PetscSNPrintf(name,sizeof(name),"name=\"%s\", ",((PetscObject)bx->v[i])->name);}
    571:       if (((PetscObject)bx->v[i])->prefix) {PetscSNPrintf(prefix,sizeof(prefix),"prefix=\"%s\", ",((PetscObject)bx->v[i])->prefix);}

    573:       PetscViewerASCIIPrintf(viewer,"(%D) : %s%stype=%s, rows=%D \n",i,name,prefix,type,NR);

    575:       PetscViewerASCIIPushTab(viewer);             /* push1 */
    576:       VecView(bx->v[i],viewer);
    577:       PetscViewerASCIIPopTab(viewer);              /* pop1 */
    578:     }
    579:     PetscViewerASCIIPopTab(viewer);                /* pop0 */
    580:   }
    581:   return(0);
    582: }

    586: static PetscErrorCode VecSize_Nest_Recursive(Vec x,PetscBool globalsize,PetscInt *L)
    587: {
    588:   Vec_Nest       *bx;
    589:   PetscInt       size,i,nr;
    590:   PetscBool      isnest;

    594:   PetscObjectTypeCompare((PetscObject)x,VECNEST,&isnest);
    595:   if (!isnest) {
    596:     /* Not nest */
    597:     if (globalsize) { VecGetSize(x,&size); }
    598:     else {            VecGetLocalSize(x,&size); }
    599:     *L = *L + size;
    600:     return(0);
    601:   }

    603:   /* Otherwise we have a nest */
    604:   bx = (Vec_Nest*)x->data;
    605:   nr = bx->nb;

    607:   /* now descend recursively */
    608:   for (i=0; i<nr; i++) {
    609:     VecSize_Nest_Recursive(bx->v[i],globalsize,L);
    610:   }
    611:   return(0);
    612: }

    614: /* Returns the sum of the global size of all the consituent vectors in the nest */
    617: static PetscErrorCode VecGetSize_Nest(Vec x,PetscInt *N)
    618: {
    620:   *N = x->map->N;
    621:   return(0);
    622: }

    624: /* Returns the sum of the local size of all the consituent vectors in the nest */
    627: static PetscErrorCode VecGetLocalSize_Nest(Vec x,PetscInt *n)
    628: {
    630:   *n = x->map->n;
    631:   return(0);
    632: }

    636: static PetscErrorCode VecMaxPointwiseDivide_Nest(Vec x,Vec y,PetscReal *max)
    637: {
    638:   Vec_Nest       *bx = (Vec_Nest*)x->data;
    639:   Vec_Nest       *by = (Vec_Nest*)y->data;
    640:   PetscInt       i,nr;
    641:   PetscReal      local_max,m;

    645:   VecNestCheckCompatible2(x,1,y,2);
    646:   nr = bx->nb;
    647:   m  = 0.0;
    648:   for (i=0; i<nr; i++) {
    649:     VecMaxPointwiseDivide(bx->v[i],by->v[i],&local_max);
    650:     if (local_max > m) m = local_max;
    651:   }
    652:   *max = m;
    653:   return(0);
    654: }

    658: static PetscErrorCode  VecGetSubVector_Nest(Vec X,IS is,Vec *x)
    659: {
    660:   Vec_Nest       *bx = (Vec_Nest*)X->data;
    661:   PetscInt       i;

    665:   *x = NULL;
    666:   for (i=0; i<bx->nb; i++) {
    667:     PetscBool issame = PETSC_FALSE;
    668:     ISEqual(is,bx->is[i],&issame);
    669:     if (issame) {
    670:       *x   = bx->v[i];
    671:       PetscObjectReference((PetscObject)(*x));
    672:       break;
    673:     }
    674:   }
    675:   if (!*x) SETERRQ(PetscObjectComm((PetscObject)is),PETSC_ERR_ARG_OUTOFRANGE,"Index set not found in nested Vec");
    676:   return(0);
    677: }

    681: static PetscErrorCode  VecRestoreSubVector_Nest(Vec X,IS is,Vec *x)
    682: {

    686:   VecDestroy(x);
    687:   return(0);
    688: }

    692: static PetscErrorCode VecGetArray_Nest(Vec X,PetscScalar **x)
    693: {
    694:   Vec_Nest       *bx = (Vec_Nest*)X->data;
    695:   PetscInt       i,m,rstart,rend;

    699:   VecGetOwnershipRange(X,&rstart,&rend);
    700:   VecGetLocalSize(X,&m);
    701:   PetscMalloc1(m,x);
    702:   for (i=0; i<bx->nb; i++) {
    703:     Vec               subvec = bx->v[i];
    704:     IS                isy    = bx->is[i];
    705:     PetscInt          j,sm;
    706:     const PetscInt    *ixy;
    707:     const PetscScalar *y;
    708:     VecGetLocalSize(subvec,&sm);
    709:     VecGetArrayRead(subvec,&y);
    710:     ISGetIndices(isy,&ixy);
    711:     for (j=0; j<sm; j++) {
    712:       PetscInt ix = ixy[j];
    713:       if (ix < rstart || rend <= ix) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for getting array from nonlocal subvec");
    714:       (*x)[ix-rstart] = y[j];
    715:     }
    716:     ISRestoreIndices(isy,&ixy);
    717:     VecRestoreArrayRead(subvec,&y);
    718:   }
    719:   return(0);
    720: }

    724: static PetscErrorCode VecRestoreArray_Nest(Vec X,PetscScalar **x)
    725: {
    726:   Vec_Nest       *bx = (Vec_Nest*)X->data;
    727:   PetscInt       i,m,rstart,rend;

    731:   VecGetOwnershipRange(X,&rstart,&rend);
    732:   VecGetLocalSize(X,&m);
    733:   for (i=0; i<bx->nb; i++) {
    734:     Vec            subvec = bx->v[i];
    735:     IS             isy    = bx->is[i];
    736:     PetscInt       j,sm;
    737:     const PetscInt *ixy;
    738:     PetscScalar    *y;
    739:     VecGetLocalSize(subvec,&sm);
    740:     VecGetArray(subvec,&y);
    741:     ISGetIndices(isy,&ixy);
    742:     for (j=0; j<sm; j++) {
    743:       PetscInt ix = ixy[j];
    744:       if (ix < rstart || rend <= ix) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for getting array from nonlocal subvec");
    745:       y[j] = (*x)[ix-rstart];
    746:     }
    747:     ISRestoreIndices(isy,&ixy);
    748:     VecRestoreArray(subvec,&y);
    749:   }
    750:   PetscFree(*x);
    751:   return(0);
    752: }

    757: static PetscErrorCode VecNestSetOps_Private(struct _VecOps *ops)
    758: {
    760:   /* 0 */
    761:   ops->duplicate               = VecDuplicate_Nest;
    762:   ops->duplicatevecs           = VecDuplicateVecs_Default;
    763:   ops->destroyvecs             = VecDestroyVecs_Default;
    764:   ops->dot                     = VecDot_Nest;
    765:   ops->mdot                    = VecMDot_Nest;

    767:   /* 5 */
    768:   ops->norm                    = VecNorm_Nest;
    769:   ops->tdot                    = VecTDot_Nest;
    770:   ops->mtdot                   = VecMTDot_Nest;
    771:   ops->scale                   = VecScale_Nest;
    772:   ops->copy                    = VecCopy_Nest;

    774:   /* 10 */
    775:   ops->set                     = VecSet_Nest;
    776:   ops->swap                    = VecSwap_Nest;
    777:   ops->axpy                    = VecAXPY_Nest;
    778:   ops->axpby                   = VecAXPBY_Nest;
    779:   ops->maxpy                   = VecMAXPY_Nest;

    781:   /* 15 */
    782:   ops->aypx                    = VecAYPX_Nest;
    783:   ops->waxpy                   = VecWAXPY_Nest;
    784:   ops->axpbypcz                = 0;
    785:   ops->pointwisemult           = VecPointwiseMult_Nest;
    786:   ops->pointwisedivide         = VecPointwiseDivide_Nest;
    787:   /* 20 */
    788:   ops->setvalues               = 0;
    789:   ops->assemblybegin           = VecAssemblyBegin_Nest;
    790:   ops->assemblyend             = VecAssemblyEnd_Nest;
    791:   ops->getarray                = VecGetArray_Nest;
    792:   ops->getsize                 = VecGetSize_Nest;

    794:   /* 25 */
    795:   ops->getlocalsize            = VecGetLocalSize_Nest;
    796:   ops->restorearray            = VecRestoreArray_Nest;
    797:   ops->max                     = VecMax_Nest;
    798:   ops->min                     = VecMin_Nest;
    799:   ops->setrandom               = 0;

    801:   /* 30 */
    802:   ops->setoption               = 0;
    803:   ops->setvaluesblocked        = 0;
    804:   ops->destroy                 = VecDestroy_Nest;
    805:   ops->view                    = VecView_Nest;
    806:   ops->placearray              = 0;

    808:   /* 35 */
    809:   ops->replacearray            = 0;
    810:   ops->dot_local               = VecDot_Nest;
    811:   ops->tdot_local              = VecTDot_Nest;
    812:   ops->norm_local              = VecNorm_Nest;
    813:   ops->mdot_local              = VecMDot_Nest;

    815:   /* 40 */
    816:   ops->mtdot_local             = VecMTDot_Nest;
    817:   ops->load                    = 0;
    818:   ops->reciprocal              = VecReciprocal_Nest;
    819:   ops->conjugate               = VecConjugate_Nest;
    820:   ops->setlocaltoglobalmapping = 0;

    822:   /* 45 */
    823:   ops->setvalueslocal          = 0;
    824:   ops->resetarray              = 0;
    825:   ops->setfromoptions          = 0;
    826:   ops->maxpointwisedivide      = VecMaxPointwiseDivide_Nest;
    827:   ops->load                    = 0;

    829:   /* 50 */
    830:   ops->pointwisemax            = 0;
    831:   ops->pointwisemaxabs         = 0;
    832:   ops->pointwisemin            = 0;
    833:   ops->getvalues               = 0;
    834:   ops->sqrt                    = 0;

    836:   /* 55 */
    837:   ops->abs                     = 0;
    838:   ops->exp                     = 0;
    839:   ops->shift                   = 0;
    840:   ops->create                  = 0;
    841:   ops->stridegather            = 0;

    843:   /* 60 */
    844:   ops->stridescatter           = 0;
    845:   ops->dotnorm2                = VecDotNorm2_Nest;
    846:   ops->getsubvector            = VecGetSubVector_Nest;
    847:   ops->restoresubvector        = VecRestoreSubVector_Nest;
    848:   return(0);
    849: }

    853: static PetscErrorCode VecNestGetSubVecs_Private(Vec x,PetscInt m,const PetscInt idxm[],Vec vec[])
    854: {
    855:   Vec_Nest *b = (Vec_Nest*)x->data;
    856:   PetscInt i;
    857:   PetscInt row;

    860:   if (!m) return(0);
    861:   for (i=0; i<m; i++) {
    862:     row = idxm[i];
    863:     if (row >= b->nb) SETERRQ2(PetscObjectComm((PetscObject)x),PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,b->nb-1);
    864:     vec[i] = b->v[row];
    865:   }
    866:   return(0);
    867: }

    871: PetscErrorCode  VecNestGetSubVec_Nest(Vec X,PetscInt idxm,Vec *sx)
    872: {

    876:   VecNestGetSubVecs_Private(X,1,&idxm,sx);
    877:   return(0);
    878: }

    882: /*@
    883:  VecNestGetSubVec - Returns a single, sub-vector from a nest vector.

    885:  Not collective

    887:  Input Parameters:
    888:  .  X  - nest vector
    889:  .  idxm - index of the vector within the nest

    891:  Output Parameter:
    892:  .  sx - vector at index idxm within the nest

    894:  Notes:

    896:  Level: developer

    898:  .seealso: VecNestGetSize(), VecNestGetSubVecs()
    899: @*/
    900: PetscErrorCode  VecNestGetSubVec(Vec X,PetscInt idxm,Vec *sx)
    901: {

    905:   PetscUseMethod(X,"VecNestGetSubVec_C",(Vec,PetscInt,Vec*),(X,idxm,sx));
    906:   return(0);
    907: }

    911: PetscErrorCode  VecNestGetSubVecs_Nest(Vec X,PetscInt *N,Vec **sx)
    912: {
    913:   Vec_Nest *b = (Vec_Nest*)X->data;

    916:   if (N)  *N  = b->nb;
    917:   if (sx) *sx = b->v;
    918:   return(0);
    919: }

    923: /*@C
    924:  VecNestGetSubVecs - Returns the entire array of vectors defining a nest vector.

    926:  Not collective

    928:  Input Parameters:
    929: .  X  - nest vector

    931:  Output Parameter:
    932: +  N - number of nested vecs
    933: -  sx - array of vectors

    935:  Notes:
    936:  The user should not free the array sx.

    938:  Fortran Notes:
    939:  The caller must allocate the array to hold the subvectors.

    941:  Level: developer

    943:  .seealso: VecNestGetSize(), VecNestGetSubVec()
    944: @*/
    945: PetscErrorCode  VecNestGetSubVecs(Vec X,PetscInt *N,Vec **sx)
    946: {

    950:   PetscUseMethod(X,"VecNestGetSubVecs_C",(Vec,PetscInt*,Vec**),(X,N,sx));
    951:   return(0);
    952: }

    956: static PetscErrorCode  VecNestSetSubVec_Private(Vec X,PetscInt idxm,Vec x)
    957: {
    958:   Vec_Nest       *bx = (Vec_Nest*)X->data;
    959:   PetscInt       i,offset=0,n=0,bs;
    960:   IS             is;
    962:   PetscBool      issame = PETSC_FALSE;
    963:   PetscInt       N=0;

    965:   /* check if idxm < bx->nb */
    966:   if (idxm >= bx->nb) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Out of range index value %D maximum %D",idxm,bx->nb);

    969:   VecDestroy(&bx->v[idxm]);       /* destroy the existing vector */
    970:   VecDuplicate(x,&bx->v[idxm]);   /* duplicate the layout of given vector */
    971:   VecCopy(x,bx->v[idxm]);         /* copy the contents of the given vector */

    973:   /* check if we need to update the IS for the block */
    974:   offset = X->map->rstart;
    975:   for (i=0; i<idxm; i++) {
    976:     n=0;
    977:     VecGetLocalSize(bx->v[i],&n);
    978:     offset += n;
    979:   }

    981:   /* get the local size and block size */
    982:   VecGetLocalSize(x,&n);
    983:   VecGetBlockSize(x,&bs);

    985:   /* create the new IS */
    986:   ISCreateStride(PetscObjectComm((PetscObject)x),n,offset,1,&is);
    987:   ISSetBlockSize(is,bs);

    989:   /* check if they are equal */
    990:   ISEqual(is,bx->is[idxm],&issame);

    992:   if (!issame) {
    993:     /* The IS of given vector has a different layout compared to the existing block vector.
    994:      Destroy the existing reference and update the IS. */
    995:     ISDestroy(&bx->is[idxm]);
    996:     ISDuplicate(is,&bx->is[idxm]);
    997:     ISCopy(is,bx->is[idxm]);

    999:     offset += n;
    1000:     /* Since the current IS[idxm] changed, we need to update all the subsequent IS */
    1001:     for (i=idxm+1; i<bx->nb; i++) {
    1002:       /* get the local size and block size */
    1003:       VecGetLocalSize(bx->v[i],&n);
    1004:       VecGetBlockSize(bx->v[i],&bs);

    1006:       /* destroy the old and create the new IS */
    1007:       ISDestroy(&bx->is[i]);
    1008:       ISCreateStride(((PetscObject)bx->v[i])->comm,n,offset,1,&bx->is[i]);
    1009:       ISSetBlockSize(bx->is[i],bs);

    1011:       offset += n;
    1012:     }

    1014:     n=0;
    1015:     VecSize_Nest_Recursive(X,PETSC_TRUE,&N);
    1016:     VecSize_Nest_Recursive(X,PETSC_FALSE,&n);
    1017:     PetscLayoutSetSize(X->map,N);
    1018:     PetscLayoutSetLocalSize(X->map,n);
    1019:   }

    1021:   ISDestroy(&is);
    1022:   return(0);
    1023: }

    1027: PetscErrorCode  VecNestSetSubVec_Nest(Vec X,PetscInt idxm,Vec sx)
    1028: {

    1032:   VecNestSetSubVec_Private(X,idxm,sx);
    1033:   return(0);
    1034: }

    1038: /*@
    1039:    VecNestSetSubVec - Set a single component vector in a nest vector at specified index.

    1041:    Not collective

    1043:    Input Parameters:
    1044: +  X  - nest vector
    1045: .  idxm - index of the vector within the nest vector
    1046: -  sx - vector at index idxm within the nest vector

    1048:    Notes:
    1049:    The new vector sx does not have to be of same size as X[idxm]. Arbitrary vector layouts are allowed.

    1051:    Level: developer

    1053: .seealso: VecNestSetSubVecs(), VecNestGetSubVec()
    1054: @*/
    1055: PetscErrorCode  VecNestSetSubVec(Vec X,PetscInt idxm,Vec sx)
    1056: {

    1060:   PetscUseMethod(X,"VecNestSetSubVec_C",(Vec,PetscInt,Vec),(X,idxm,sx));
    1061:   return(0);
    1062: }

    1066: PetscErrorCode  VecNestSetSubVecs_Nest(Vec X,PetscInt N,PetscInt *idxm,Vec *sx)
    1067: {
    1068:   PetscInt       i;

    1072:   for (i=0; i<N; i++) {
    1073:     VecNestSetSubVec_Private(X,idxm[i],sx[i]);
    1074:   }
    1075:   return(0);
    1076: }

    1080: /*@C
    1081:    VecNestSetSubVecs - Sets the component vectors at the specified indices in a nest vector.

    1083:    Not collective

    1085:    Input Parameters:
    1086: +  X  - nest vector
    1087: .  N - number of component vecs in sx
    1088: .  idxm - indices of component vecs that are to be replaced
    1089: -  sx - array of vectors

    1091:    Notes:
    1092:    The components in the vector array sx do not have to be of the same size as corresponding
    1093:    components in X. The user can also free the array "sx" after the call.

    1095:    Level: developer

    1097: .seealso: VecNestGetSize(), VecNestGetSubVec()
    1098: @*/
    1099: PetscErrorCode  VecNestSetSubVecs(Vec X,PetscInt N,PetscInt *idxm,Vec *sx)
    1100: {

    1104:   PetscUseMethod(X,"VecNestSetSubVecs_C",(Vec,PetscInt,PetscInt*,Vec*),(X,N,idxm,sx));
    1105:   return(0);
    1106: }

    1110: PetscErrorCode  VecNestGetSize_Nest(Vec X,PetscInt *N)
    1111: {
    1112:   Vec_Nest *b = (Vec_Nest*)X->data;

    1115:   *N = b->nb;
    1116:   return(0);
    1117: }

    1121: /*@
    1122:  VecNestGetSize - Returns the size of the nest vector.

    1124:  Not collective

    1126:  Input Parameters:
    1127:  .  X  - nest vector

    1129:  Output Parameter:
    1130:  .  N - number of nested vecs

    1132:  Notes:

    1134:  Level: developer

    1136:  .seealso: VecNestGetSubVec(), VecNestGetSubVecs()
    1137: @*/
    1138: PetscErrorCode  VecNestGetSize(Vec X,PetscInt *N)
    1139: {

    1145:   PetscUseMethod(X,"VecNestGetSize_C",(Vec,PetscInt*),(X,N));
    1146:   return(0);
    1147: }

    1151: static PetscErrorCode VecSetUp_Nest_Private(Vec V,PetscInt nb,Vec x[])
    1152: {
    1153:   Vec_Nest       *ctx = (Vec_Nest*)V->data;
    1154:   PetscInt       i;

    1158:   if (ctx->setup_called) return(0);

    1160:   ctx->nb = nb;
    1161:   if (ctx->nb < 0) SETERRQ(PetscObjectComm((PetscObject)V),PETSC_ERR_ARG_WRONG,"Cannot create VECNEST with < 0 blocks.");

    1163:   /* Create space */
    1164:   PetscMalloc1(ctx->nb,&ctx->v);
    1165:   for (i=0; i<ctx->nb; i++) {
    1166:     ctx->v[i] = x[i];
    1167:     PetscObjectReference((PetscObject)x[i]);
    1168:     /* Do not allocate memory for internal sub blocks */
    1169:   }

    1171:   PetscMalloc1(ctx->nb,&ctx->is);

    1173:   ctx->setup_called = PETSC_TRUE;
    1174:   return(0);
    1175: }

    1179: static PetscErrorCode VecSetUp_NestIS_Private(Vec V,PetscInt nb,IS is[])
    1180: {
    1181:   Vec_Nest       *ctx = (Vec_Nest*)V->data;
    1182:   PetscInt       i,offset,m,n,M,N;

    1186:   if (is) {                     /* Do some consistency checks and reference the is */
    1187:     offset = V->map->rstart;
    1188:     for (i=0; i<ctx->nb; i++) {
    1189:       ISGetSize(is[i],&M);
    1190:       VecGetSize(ctx->v[i],&N);
    1191:       if (M != N) SETERRQ3(PetscObjectComm((PetscObject)V),PETSC_ERR_ARG_INCOMP,"In slot %D, IS of size %D is not compatible with Vec of size %D",i,M,N);
    1192:       ISGetLocalSize(is[i],&m);
    1193:       VecGetLocalSize(ctx->v[i],&n);
    1194:       if (m != n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"In slot %D, IS of local size %D is not compatible with Vec of local size %D",i,m,n);
    1195: #if defined(PETSC_USE_DEBUG)
    1196:       {                         /* This test can be expensive */
    1197:         PetscInt  start;
    1198:         PetscBool contiguous;
    1199:         ISContiguousLocal(is[i],offset,offset+n,&start,&contiguous);
    1200:         if (!contiguous) SETERRQ1(PetscObjectComm((PetscObject)V),PETSC_ERR_SUP,"Index set %D is not contiguous with layout of matching vector",i);
    1201:         if (start != 0) SETERRQ1(PetscObjectComm((PetscObject)V),PETSC_ERR_SUP,"Index set %D introduces overlap or a hole",i);
    1202:       }
    1203: #endif
    1204:       PetscObjectReference((PetscObject)is[i]);
    1205:       ctx->is[i] = is[i];
    1206:       offset += n;
    1207:     }
    1208:   } else {                      /* Create a contiguous ISStride for each entry */
    1209:     offset = V->map->rstart;
    1210:     for (i=0; i<ctx->nb; i++) {
    1211:       PetscInt bs;
    1212:       VecGetLocalSize(ctx->v[i],&n);
    1213:       VecGetBlockSize(ctx->v[i],&bs);
    1214:       ISCreateStride(((PetscObject)ctx->v[i])->comm,n,offset,1,&ctx->is[i]);
    1215:       ISSetBlockSize(ctx->is[i],bs);
    1216:       offset += n;
    1217:     }
    1218:   }
    1219:   return(0);
    1220: }

    1224: /*@C
    1225:    VecCreateNest - Creates a new vector containing several nested subvectors, each stored separately

    1227:    Collective on Vec

    1229:    Input Parameter:
    1230: +  comm - Communicator for the new Vec
    1231: .  nb - number of nested blocks
    1232: .  is - array of nb index sets describing each nested block, or NULL to pack subvectors contiguously
    1233: -  x - array of nb sub-vectors

    1235:    Output Parameter:
    1236: .  Y - new vector

    1238:    Level: advanced

    1240: .seealso: VecCreate(), MatCreateNest(), DMSetVecType(), VECNEST
    1241: @*/
    1242: PetscErrorCode  VecCreateNest(MPI_Comm comm,PetscInt nb,IS is[],Vec x[],Vec *Y)
    1243: {
    1244:   Vec            V;
    1245:   Vec_Nest       *s;
    1246:   PetscInt       n,N;

    1250:   VecCreate(comm,&V);
    1251:   PetscObjectChangeTypeName((PetscObject)V,VECNEST);

    1253:   /* allocate and set pointer for implememtation data */
    1254:   PetscMalloc(sizeof(Vec_Nest),&s);
    1255:   PetscMemzero(s,sizeof(Vec_Nest));
    1256:   V->data          = (void*)s;
    1257:   s->setup_called  = PETSC_FALSE;
    1258:   s->nb            = -1;
    1259:   s->v             = NULL;

    1261:   VecSetUp_Nest_Private(V,nb,x);

    1263:   n = N = 0;
    1264:   VecSize_Nest_Recursive(V,PETSC_TRUE,&N);
    1265:   VecSize_Nest_Recursive(V,PETSC_FALSE,&n);
    1266:   PetscLayoutSetSize(V->map,N);
    1267:   PetscLayoutSetLocalSize(V->map,n);
    1268:   PetscLayoutSetBlockSize(V->map,1);
    1269:   PetscLayoutSetUp(V->map);

    1271:   VecSetUp_NestIS_Private(V,nb,is);

    1273:   VecNestSetOps_Private(V->ops);
    1274:   V->petscnative = PETSC_FALSE;

    1277:   /* expose block api's */
    1278:   PetscObjectComposeFunction((PetscObject)V,"VecNestGetSubVec_C",VecNestGetSubVec_Nest);
    1279:   PetscObjectComposeFunction((PetscObject)V,"VecNestGetSubVecs_C",VecNestGetSubVecs_Nest);
    1280:   PetscObjectComposeFunction((PetscObject)V,"VecNestSetSubVec_C",VecNestSetSubVec_Nest);
    1281:   PetscObjectComposeFunction((PetscObject)V,"VecNestSetSubVecs_C",VecNestSetSubVecs_Nest);
    1282:   PetscObjectComposeFunction((PetscObject)V,"VecNestGetSize_C",VecNestGetSize_Nest);

    1284:   *Y = V;
    1285:   return(0);
    1286: }

    1288: /*MC
    1289:   VECNEST - VECNEST = "nest" - Vector type consisting of nested subvectors, each stored separately.

    1291:   Level: intermediate

    1293:   Notes:
    1294:   This vector type reduces the number of copies for certain solvers applied to multi-physics problems.
    1295:   It is usually used with MATNEST and DMComposite via DMSetVecType().

    1297: .seealso: VecCreate(), VecType, VecCreateNest(), MatCreateNest()
    1298: M*/