Date: 2016-07-24T16:54:03+00:00

Actual source code: mpb_aij.c
petsc-3.7.3 2016-07-24
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      1: #include <../src/mat/impls/aij/mpi/mpiaij.h>

      5: PetscErrorCode  MatGetMultiProcBlock_MPIAIJ(Mat mat, MPI_Comm subComm, MatReuse scall,Mat *subMat)
      6: {
      8:   Mat_MPIAIJ     *aij  = (Mat_MPIAIJ*)mat->data;
      9:   Mat_SeqAIJ     *aijB = (Mat_SeqAIJ*)aij->B->data;
     10:   PetscMPIInt    commRank,subCommSize,subCommRank;
     11:   PetscMPIInt    *commRankMap,subRank,rank,commsize;
     12:   PetscInt       *garrayCMap,col,i,j,*nnz,newRow,newCol;

     15:   MPI_Comm_size(PetscObjectComm((PetscObject)mat),&commsize);
     16:   MPI_Comm_size(subComm,&subCommSize);

     18:   /* create subMat object with the relavent layout */
     19:   if (scall == MAT_INITIAL_MATRIX) {
     20:     MatCreate(subComm,subMat);
     21:     MatSetType(*subMat,MATMPIAIJ);
     22:     MatSetSizes(*subMat,mat->rmap->n,mat->cmap->n,PETSC_DECIDE,PETSC_DECIDE);
     23:     MatSetBlockSizesFromMats(*subMat,mat,mat);

     25:     /* need to setup rmap and cmap before Preallocation */
     26:     PetscLayoutSetUp((*subMat)->rmap);
     27:     PetscLayoutSetUp((*subMat)->cmap);
     28:   }

     30:   /* create a map of comm_rank from subComm to comm - should commRankMap and garrayCMap be kept for reused? */
     31:   MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&commRank);
     32:   MPI_Comm_rank(subComm,&subCommRank);
     33:   PetscMalloc1(subCommSize,&commRankMap);
     34:   MPI_Allgather(&commRank,1,MPI_INT,commRankMap,1,MPI_INT,subComm);

     36:   /* Traverse garray and identify column indices [of offdiag mat] that
     37:    should be discarded. For the ones not discarded, store the newCol+1
     38:    value in garrayCMap */
     39:   PetscCalloc1(aij->B->cmap->n,&garrayCMap);
     40:   for (i=0; i<aij->B->cmap->n; i++) {
     41:     col = aij->garray[i];
     42:     for (subRank=0; subRank<subCommSize; subRank++) {
     43:       rank = commRankMap[subRank];
     44:       if ((col >= mat->cmap->range[rank]) && (col < mat->cmap->range[rank+1])) {
     45:         garrayCMap[i] = (*subMat)->cmap->range[subRank] + col - mat->cmap->range[rank]+1;
     46:         break;
     47:       }
     48:     }
     49:   }

     51:   if (scall == MAT_INITIAL_MATRIX) {
     52:     /* Now compute preallocation for the offdiag mat */
     53:     PetscCalloc1(aij->B->rmap->n,&nnz);
     54:     for (i=0; i<aij->B->rmap->n; i++) {
     55:       for (j=aijB->i[i]; j<aijB->i[i+1]; j++) {
     56:         if (garrayCMap[aijB->j[j]]) nnz[i]++;
     57:       }
     58:     }
     59:     MatMPIAIJSetPreallocation(*(subMat),0,NULL,0,nnz);

     61:     /* reuse diag block with the new submat */
     62:     MatDestroy(&((Mat_MPIAIJ*)((*subMat)->data))->A);

     64:     ((Mat_MPIAIJ*)((*subMat)->data))->A = aij->A;

     66:     PetscObjectReference((PetscObject)aij->A);
     67:   } else if (((Mat_MPIAIJ*)(*subMat)->data)->A != aij->A) {
     68:     PetscObject obj = (PetscObject)((Mat_MPIAIJ*)((*subMat)->data))->A;

     70:     PetscObjectReference((PetscObject)obj);

     72:     ((Mat_MPIAIJ*)((*subMat)->data))->A = aij->A;

     74:     PetscObjectReference((PetscObject)aij->A);
     75:   }

     77:   /* Now traverse aij->B and insert values into subMat */
     78:   for (i=0; i<aij->B->rmap->n; i++) {
     79:     newRow = (*subMat)->rmap->range[subCommRank] + i;
     80:     for (j=aijB->i[i]; j<aijB->i[i+1]; j++) {
     81:       newCol = garrayCMap[aijB->j[j]];
     82:       if (newCol) {
     83:         newCol--; /* remove the increment */
     84:         MatSetValues(*subMat,1,&newRow,1,&newCol,(aijB->a+j),INSERT_VALUES);
     85:       }
     86:     }
     87:   }

     89:   /* assemble the submat */
     90:   MatAssemblyBegin(*subMat,MAT_FINAL_ASSEMBLY);
     91:   MatAssemblyEnd(*subMat,MAT_FINAL_ASSEMBLY);

     93:   /* deallocate temporary data */
     94:   PetscFree(commRankMap);
     95:   PetscFree(garrayCMap);
     96:   if (scall == MAT_INITIAL_MATRIX) {
     97:     PetscFree(nnz);
     98:   }
     99:   return(0);
    100: }