Date: 2016-07-24T17:12:33+00:00

Actual source code: mimex.c
petsc-3.7.3 2016-07-24
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      1: /*
      2:        Code for Timestepping with my makeshift IMEX.
      3: */
      4: #include <petsc/private/tsimpl.h>                /*I   "petscts.h"   I*/
      5: #include <petscds.h>
      6: #include <petscdmplex.h>

      8: typedef struct {
      9:   Vec       Xdot, update;
     10:   PetscReal stage_time;
     11:   PetscInt  version;
     12: } TS_Mimex;

     16: static PetscErrorCode TSMimexGetX0AndXdot(TS ts, DM dm, Vec *X0, Vec *Xdot)
     17: {
     18:   TS_Mimex      *mimex = (TS_Mimex *) ts->data;

     22:   if (X0) {
     23:     if (dm && dm != ts->dm) {DMGetNamedGlobalVector(dm, "TSMimex_X0", X0);}
     24:     else                    {*X0  = ts->vec_sol;}
     25:   }
     26:   if (Xdot) {
     27:     if (dm && dm != ts->dm) {DMGetNamedGlobalVector(dm, "TSMimex_Xdot", Xdot);}
     28:     else                    {*Xdot = mimex->Xdot;}
     29:   }
     30:   return(0);
     31: }

     35: static PetscErrorCode TSMimexRestoreX0AndXdot(TS ts, DM dm, Vec *X0, Vec *Xdot)
     36: {

     40:   if (X0)   if (dm && dm != ts->dm) {DMRestoreNamedGlobalVector(dm, "TSMimex_X0", X0);}
     41:   if (Xdot) if (dm && dm != ts->dm) {DMRestoreNamedGlobalVector(dm, "TSMimex_Xdot", Xdot);}
     42:   return(0);
     43: }

     47: static PetscErrorCode TSMimexGetXstarAndG(TS ts, DM dm, Vec *Xstar, Vec *G)
     48: {

     52:   DMGetNamedGlobalVector(dm, "TSMimex_Xstar", Xstar);
     53:   DMGetNamedGlobalVector(dm, "TSMimex_G", G);
     54:   return(0);
     55: }

     59: static PetscErrorCode TSMimexRestoreXstarAndG(TS ts, DM dm, Vec *Xstar, Vec *G)
     60: {

     64:   DMRestoreNamedGlobalVector(dm, "TSMimex_Xstar", Xstar);
     65:   DMRestoreNamedGlobalVector(dm, "TSMimex_G", G);
     66:   return(0);
     67: }

     69: /*
     70:   This defines the nonlinear equation that is to be solved with SNES
     71:   G(U) = F[t0+dt, U, (U-U0)*shift] = 0
     72: */
     75: static PetscErrorCode SNESTSFormFunction_Mimex(SNES snes, Vec x, Vec y, TS ts)
     76: {
     77:   TS_Mimex      *mimex = (TS_Mimex *) ts->data;
     78:   DM             dm, dmsave;
     79:   Vec            X0, Xdot;
     80:   PetscReal      shift = 1./ts->time_step;

     84:   SNESGetDM(snes, &dm);
     85:   TSMimexGetX0AndXdot(ts, dm, &X0, &Xdot);
     86:   VecAXPBYPCZ(Xdot, -shift, shift, 0, X0, x);

     88:   /* DM monkey-business allows user code to call TSGetDM() inside of functions evaluated on levels of FAS */
     89:   dmsave = ts->dm;
     90:   ts->dm = dm;
     91:   TSComputeIFunction(ts, mimex->stage_time, x, Xdot, y, PETSC_TRUE);
     92:   if (mimex->version == 1) {
     93:     DM                 dm;
     94:     PetscDS            prob;
     95:     PetscSection       s;
     96:     Vec                Xstar = NULL, G = NULL;
     97:     const PetscScalar *ax;
     98:     PetscScalar       *axstar;
     99:     PetscInt           Nf, f, pStart, pEnd, p;

    101:     TSGetDM(ts, &dm);
    102:     DMGetDS(dm, &prob);
    103:     DMGetDefaultSection(dm, &s);
    104:     PetscDSGetNumFields(prob, &Nf);
    105:     PetscSectionGetChart(s, &pStart, &pEnd);
    106:     TSMimexGetXstarAndG(ts, dm, &Xstar, &G);
    107:     VecCopy(X0, Xstar);
    108:     VecGetArrayRead(x, &ax);
    109:     VecGetArray(Xstar, &axstar);
    110:     for (f = 0; f < Nf; ++f) {
    111:       PetscBool implicit;

    113:       PetscDSGetImplicit(prob, f, &implicit);
    114:       if (!implicit) continue;
    115:       for (p = pStart; p < pEnd; ++p) {
    116:         PetscScalar *a, *axs;
    117:         PetscInt     fdof, fcdof, d;

    119:         PetscSectionGetFieldDof(s, p, f, &fdof);
    120:         PetscSectionGetFieldConstraintDof(s, p, f, &fcdof);
    121:         DMPlexPointGlobalFieldRead(dm, p, f, ax, &a);
    122:         DMPlexPointGlobalFieldRef(dm, p, f, axstar, &axs);
    123:         for (d = 0; d < fdof-fcdof; ++d) axs[d] = a[d];
    124:       }
    125:     }
    126:     VecRestoreArrayRead(x, &ax);
    127:     VecRestoreArray(Xstar, &axstar);
    128:     TSComputeRHSFunction(ts, ts->ptime, Xstar, G);
    129:     VecAXPY(y, -1.0, G);
    130:     TSMimexRestoreXstarAndG(ts, dm, &Xstar, &G);
    131:   }
    132:   ts->dm = dmsave;
    133:   TSMimexRestoreX0AndXdot(ts, dm, &X0, &Xdot);
    134:   return(0);
    135: }

    139: static PetscErrorCode SNESTSFormJacobian_Mimex(SNES snes, Vec x, Mat A, Mat B, TS ts)
    140: {
    141:   TS_Mimex      *mimex = (TS_Mimex *) ts->data;
    142:   DM             dm, dmsave;
    143:   Vec            Xdot;
    144:   PetscReal      shift = 1./ts->time_step;

    148:   /* th->Xdot has already been computed in SNESTSFormFunction_Mimex (SNES guarantees this) */
    149:   SNESGetDM(snes, &dm);
    150:   TSMimexGetX0AndXdot(ts, dm, NULL, &Xdot);

    152:   /* DM monkey-business allows user code to call TSGetDM() inside of functions evaluated on levels of FAS */
    153:   dmsave = ts->dm;
    154:   ts->dm = dm;
    155:   TSComputeIJacobian(ts, mimex->stage_time, x, Xdot, shift, A, B, PETSC_TRUE);
    156:   ts->dm = dmsave;
    157:   TSMimexRestoreX0AndXdot(ts, dm, NULL, &Xdot);
    158:   return(0);
    159: }

    163: static PetscErrorCode TSStep_Mimex_Split(TS ts)
    164: {
    165:   TS_Mimex          *mimex = (TS_Mimex *) ts->data;
    166:   DM                 dm;
    167:   PetscDS            prob;
    168:   PetscSection       s;
    169:   Vec                sol = ts->vec_sol, update = mimex->update;
    170:   const PetscScalar *aupdate;
    171:   PetscScalar       *asol, dt = ts->time_step;
    172:   PetscInt           Nf, f, pStart, pEnd, p;
    173:   PetscErrorCode     ierr;

    176:   TSGetDM(ts, &dm);
    177:   DMGetDS(dm, &prob);
    178:   DMGetDefaultSection(dm, &s);
    179:   PetscDSGetNumFields(prob, &Nf);
    180:   PetscSectionGetChart(s, &pStart, &pEnd);
    181:   TSPreStage(ts, ts->ptime);
    182:   /* Compute implicit update */
    183:   mimex->stage_time = ts->ptime + ts->time_step;
    184:   VecCopy(sol, update);
    185:   SNESSolve(ts->snes, NULL, update);
    186:   VecGetArrayRead(update, &aupdate);
    187:   VecGetArray(sol, &asol);
    188:   for (f = 0; f < Nf; ++f) {
    189:     PetscBool implicit;

    191:     PetscDSGetImplicit(prob, f, &implicit);
    192:     if (!implicit) continue;
    193:     for (p = pStart; p < pEnd; ++p) {
    194:       PetscScalar *au, *as;
    195:       PetscInt     fdof, fcdof, d;

    197:       PetscSectionGetFieldDof(s, p, f, &fdof);
    198:       PetscSectionGetFieldConstraintDof(s, p, f, &fcdof);
    199:       DMPlexPointGlobalFieldRead(dm, p, f, aupdate, &au);
    200:       DMPlexPointGlobalFieldRef(dm, p, f, asol, &as);
    201:       for (d = 0; d < fdof-fcdof; ++d) as[d] = au[d];
    202:     }
    203:   }
    204:   VecRestoreArrayRead(update, &aupdate);
    205:   VecRestoreArray(sol, &asol);
    206:   /* Compute explicit update */
    207:   TSComputeRHSFunction(ts, ts->ptime, sol, update);
    208:   VecGetArrayRead(update, &aupdate);
    209:   VecGetArray(sol, &asol);
    210:   for (f = 0; f < Nf; ++f) {
    211:     PetscBool implicit;

    213:     PetscDSGetImplicit(prob, f, &implicit);
    214:     if (implicit) continue;
    215:     for (p = pStart; p < pEnd; ++p) {
    216:       PetscScalar *au, *as;
    217:       PetscInt     fdof, fcdof, d;

    219:       PetscSectionGetFieldDof(s, p, f, &fdof);
    220:       PetscSectionGetFieldConstraintDof(s, p, f, &fcdof);
    221:       DMPlexPointGlobalFieldRead(dm, p, f, aupdate, &au);
    222:       DMPlexPointGlobalFieldRef(dm, p, f, asol, &as);
    223:       for (d = 0; d < fdof-fcdof; ++d) as[d] += dt*au[d];
    224:     }
    225:   }
    226:   VecRestoreArrayRead(update, &aupdate);
    227:   VecRestoreArray(sol, &asol);
    228:   TSPostStage(ts, ts->ptime, 0, &sol);
    229:   ts->ptime += ts->time_step;
    230:   return(0);
    231: }

    236: /* Evalute F at U and G at U0 for explicit fields and U for implicit fields */
    237: static PetscErrorCode TSStep_Mimex_Implicit(TS ts)
    238: {
    239:   TS_Mimex      *mimex  = (TS_Mimex *) ts->data;
    240:   Vec            sol    = ts->vec_sol;
    241:   Vec            update = mimex->update;

    245:   TSPreStage(ts, ts->ptime);
    246:   /* Compute implicit update */
    247:   mimex->stage_time = ts->ptime + ts->time_step;
    248:   ts->ptime += ts->time_step;
    249:   VecCopy(sol, update);
    250:   SNESSolve(ts->snes, NULL, update);
    251:   VecCopy(update, sol);
    252:   TSPostStage(ts, ts->ptime, 0, &sol);
    253:   return(0);
    254: }

    258: static PetscErrorCode TSStep_Mimex(TS ts)
    259: {
    260:   TS_Mimex       *mimex = (TS_Mimex*)ts->data;
    261:   PetscErrorCode  ierr;

    264:   switch(mimex->version) {
    265:   case 0:
    266:     TSStep_Mimex_Split(ts); break;
    267:   case 1:
    268:     TSStep_Mimex_Implicit(ts); break;
    269:   default:
    270:     SETERRQ1(PetscObjectComm((PetscObject) ts), PETSC_ERR_ARG_OUTOFRANGE, "Unknown MIMEX version %d", mimex->version);
    271:   }
    272:   return(0);
    273: }

    275: /*------------------------------------------------------------*/

    279: static PetscErrorCode TSSetUp_Mimex(TS ts)
    280: {
    281:   TS_Mimex       *mimex = (TS_Mimex*)ts->data;

    285:   VecDuplicate(ts->vec_sol, &mimex->update);
    286:   VecDuplicate(ts->vec_sol, &mimex->Xdot);
    287:   return(0);
    288: }

    292: static PetscErrorCode TSReset_Mimex(TS ts)
    293: {
    294:   TS_Mimex       *mimex = (TS_Mimex*)ts->data;

    298:   VecDestroy(&mimex->update);
    299:   VecDestroy(&mimex->Xdot);
    300:   return(0);
    301: }

    305: static PetscErrorCode TSDestroy_Mimex(TS ts)
    306: {

    310:   TSReset_Mimex(ts);
    311:   PetscFree(ts->data);
    312:   return(0);
    313: }
    314: /*------------------------------------------------------------*/

    318: static PetscErrorCode TSSetFromOptions_Mimex(PetscOptionItems *PetscOptionsObject, TS ts)
    319: {
    320:   TS_Mimex      *mimex = (TS_Mimex *) ts->data;

    324:   PetscOptionsHead(PetscOptionsObject, "MIMEX ODE solver options");
    325:   {
    326:     PetscOptionsInt("-ts_mimex_version", "Algorithm version", "TSMimexSetVersion", mimex->version, &mimex->version, NULL);
    327:   }
    328:   PetscOptionsTail();
    329:   return(0);
    330: }

    334: static PetscErrorCode TSView_Mimex(TS ts,PetscViewer viewer)
    335: {
    336:   TS_Mimex      *mimex = (TS_Mimex *) ts->data;
    337:   PetscBool      iascii;

    341:   PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERASCII, &iascii);
    342:   if (iascii) {
    343:     PetscViewerASCIIPrintf(viewer, "  Version = %D\n", mimex->version);
    344:   }
    345:   if (ts->snes) {SNESView(ts->snes, viewer);}
    346:   return(0);
    347: }

    351: static PetscErrorCode TSInterpolate_Mimex(TS ts,PetscReal t,Vec X)
    352: {
    353:   PetscReal      alpha = (ts->ptime - t)/ts->time_step;

    357:   VecAXPBY(ts->vec_sol,1.0-alpha,alpha,X);
    358:   return(0);
    359: }

    363: static PetscErrorCode TSComputeLinearStability_Mimex(TS ts,PetscReal xr,PetscReal xi,PetscReal *yr,PetscReal *yi)
    364: {
    366:   *yr = 1.0 + xr;
    367:   *yi = xi;
    368:   return(0);
    369: }
    370: /* ------------------------------------------------------------ */

    372: /*MC
    373:       TSMIMEX - ODE solver using the explicit forward Mimex method

    375:   Level: beginner

    377: .seealso:  TSCreate(), TS, TSSetType(), TSBEULER

    379: M*/
    382: PETSC_EXTERN PetscErrorCode TSCreate_Mimex(TS ts)
    383: {
    384:   TS_Mimex       *mimex;

    388:   ts->ops->setup           = TSSetUp_Mimex;
    389:   ts->ops->step            = TSStep_Mimex;
    390:   ts->ops->reset           = TSReset_Mimex;
    391:   ts->ops->destroy         = TSDestroy_Mimex;
    392:   ts->ops->setfromoptions  = TSSetFromOptions_Mimex;
    393:   ts->ops->view            = TSView_Mimex;
    394:   ts->ops->interpolate     = TSInterpolate_Mimex;
    395:   ts->ops->linearstability = TSComputeLinearStability_Mimex;
    396:   ts->ops->snesfunction    = SNESTSFormFunction_Mimex;
    397:   ts->ops->snesjacobian    = SNESTSFormJacobian_Mimex;

    399:   PetscNewLog(ts,&mimex);
    400:   ts->data = (void*)mimex;

    402:   mimex->version = 1;
    403:   return(0);
    404: }