Date: 2016-07-24T16:59:34+00:00

Actual source code: mhyp.c
petsc-3.7.3 2016-07-24
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      2: /*
      3:     Creates hypre ijmatrix from PETSc matrix
      4: */
      5: #include <petscsys.h>
      6: #include <petsc/private/matimpl.h>
      7: #include <petscdmda.h>                /*I "petscdmda.h" I*/
      8: #include <../src/dm/impls/da/hypre/mhyp.h>

     12: PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat A_d, Mat A_o,HYPRE_IJMatrix ij)
     13: {
     15:   PetscInt       i,n_d,n_o;
     16:   const PetscInt *ia_d,*ia_o;
     17:   PetscBool      done_d=PETSC_FALSE,done_o=PETSC_FALSE;
     18:   PetscInt       *nnz_d=NULL,*nnz_o=NULL;

     21:   if (A_d) { /* determine number of nonzero entries in local diagonal part */
     22:     MatGetRowIJ(A_d,0,PETSC_FALSE,PETSC_FALSE,&n_d,&ia_d,NULL,&done_d);
     23:     if (done_d) {
     24:       PetscMalloc1(n_d,&nnz_d);
     25:       for (i=0; i<n_d; i++) {
     26:         nnz_d[i] = ia_d[i+1] - ia_d[i];
     27:       }
     28:     }
     29:     MatRestoreRowIJ(A_d,0,PETSC_FALSE,PETSC_FALSE,NULL,&ia_d,NULL,&done_d);
     30:   }
     31:   if (A_o) { /* determine number of nonzero entries in local off-diagonal part */
     32:     MatGetRowIJ(A_o,0,PETSC_FALSE,PETSC_FALSE,&n_o,&ia_o,NULL,&done_o);
     33:     if (done_o) {
     34:       PetscMalloc1(n_o,&nnz_o);
     35:       for (i=0; i<n_o; i++) {
     36:         nnz_o[i] = ia_o[i+1] - ia_o[i];
     37:       }
     38:     }
     39:     MatRestoreRowIJ(A_o,0,PETSC_FALSE,PETSC_FALSE,&n_o,&ia_o,NULL,&done_o);
     40:   }
     41:   if (done_d) {    /* set number of nonzeros in HYPRE IJ matrix */
     42:     if (!done_o) { /* only diagonal part */
     43:       PetscMalloc1(n_d,&nnz_o);
     44:       for (i=0; i<n_d; i++) {
     45:         nnz_o[i] = 0;
     46:       }
     47:     }
     48:     PetscStackCallStandard(HYPRE_IJMatrixSetDiagOffdSizes,(ij,(HYPRE_Int *)nnz_d,(HYPRE_Int *)nnz_o));
     49:     PetscFree(nnz_d);
     50:     PetscFree(nnz_o);
     51:   }
     52:   return(0);
     53: }

     57: PetscErrorCode MatHYPRE_IJMatrixCreate(Mat A,HYPRE_IJMatrix *ij)
     58: {
     60:   PetscInt       rstart,rend,cstart,cend;

     66:   MatSetUp(A);
     67:   rstart = A->rmap->rstart;
     68:   rend   = A->rmap->rend;
     69:   cstart = A->cmap->rstart;
     70:   cend   = A->cmap->rend;
     71:   PetscStackCallStandard(HYPRE_IJMatrixCreate,(PetscObjectComm((PetscObject)A),rstart,rend-1,cstart,cend-1,ij));
     72:   PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(*ij,HYPRE_PARCSR));
     73:   {
     74:     PetscBool      same;
     75:     Mat            A_d,A_o;
     76:     const PetscInt *colmap;
     77:     PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&same);
     78:     if (same) {
     79:       MatMPIAIJGetSeqAIJ(A,&A_d,&A_o,&colmap);
     80:       MatHYPRE_IJMatrixPreallocate(A_d,A_o,*ij);
     81:       return(0);
     82:     }
     83:     PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&same);
     84:     if (same) {
     85:       MatMPIBAIJGetSeqBAIJ(A,&A_d,&A_o,&colmap);
     86:       MatHYPRE_IJMatrixPreallocate(A_d,A_o,*ij);
     87:       return(0);
     88:     }
     89:     PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&same);
     90:     if (same) {
     91:       MatHYPRE_IJMatrixPreallocate(A,NULL,*ij);
     92:       return(0);
     93:     }
     94:     PetscObjectTypeCompare((PetscObject)A,MATSEQBAIJ,&same);
     95:     if (same) {
     96:       MatHYPRE_IJMatrixPreallocate(A,NULL,*ij);
     97:       return(0);
     98:     }
     99:   }
    100:   return(0);
    101: }

    103: extern PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat,HYPRE_IJMatrix);
    104: extern PetscErrorCode MatHYPRE_IJMatrixFastCopy_SeqAIJ(Mat,HYPRE_IJMatrix);
    105: /*
    106:     Copies the data over (column indices, numerical values) to hypre matrix
    107: */

    111: PetscErrorCode MatHYPRE_IJMatrixCopy(Mat A,HYPRE_IJMatrix ij)
    112: {
    113:   PetscErrorCode    ierr;
    114:   PetscInt          i,rstart,rend,ncols,nr,nc;
    115:   const PetscScalar *values;
    116:   const PetscInt    *cols;
    117:   PetscBool         flg;

    120:   PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&flg);
    121:   MatGetSize(A,&nr,&nc);
    122:   if (flg && nr == nc) {
    123:     MatHYPRE_IJMatrixFastCopy_MPIAIJ(A,ij);
    124:     return(0);
    125:   }
    126:   PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&flg);
    127:   if (flg) {
    128:     MatHYPRE_IJMatrixFastCopy_SeqAIJ(A,ij);
    129:     return(0);
    130:   }

    132:   PetscLogEventBegin(MAT_Convert,A,0,0,0);
    133:   PetscStackCallStandard(HYPRE_IJMatrixInitialize,(ij));
    134:   MatGetOwnershipRange(A,&rstart,&rend);
    135:   for (i=rstart; i<rend; i++) {
    136:     MatGetRow(A,i,&ncols,&cols,&values);
    137:     PetscStackCallStandard(HYPRE_IJMatrixSetValues,(ij,1,(HYPRE_Int *)&ncols,(HYPRE_Int *)&i,(HYPRE_Int *)cols,values));
    138:     MatRestoreRow(A,i,&ncols,&cols,&values);
    139:   }
    140:   PetscStackCallStandard(HYPRE_IJMatrixAssemble,(ij));
    141:   PetscLogEventEnd(MAT_Convert,A,0,0,0);
    142:   return(0);
    143: }

    145: /*
    146:     This copies the CSR format directly from the PETSc data structure to the hypre
    147:     data structure without calls to MatGetRow() or hypre's set values.

    149: */
    150: #include <_hypre_IJ_mv.h>
    151: #include <HYPRE_IJ_mv.h>
    152: #include <../src/mat/impls/aij/mpi/mpiaij.h>

    156: PetscErrorCode MatHYPRE_IJMatrixFastCopy_SeqAIJ(Mat A,HYPRE_IJMatrix ij)
    157: {
    159:   Mat_SeqAIJ     *pdiag = (Mat_SeqAIJ*)A->data;

    161:   hypre_ParCSRMatrix    *par_matrix;
    162:   hypre_AuxParCSRMatrix *aux_matrix;
    163:   hypre_CSRMatrix       *hdiag;

    170:   PetscLogEventBegin(MAT_Convert,A,0,0,0);
    171:   PetscStackCallStandard(HYPRE_IJMatrixInitialize,(ij));
    172:   par_matrix = (hypre_ParCSRMatrix*)hypre_IJMatrixObject(ij);
    173:   aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij);
    174:   hdiag      = hypre_ParCSRMatrixDiag(par_matrix);

    176:   /*
    177:        this is the Hack part where we monkey directly with the hypre datastructures
    178:   */
    179:   PetscMemcpy(hdiag->i,pdiag->i,(A->rmap->n + 1)*sizeof(PetscInt));
    180:   PetscMemcpy(hdiag->j,pdiag->j,pdiag->nz*sizeof(PetscInt));
    181:   PetscMemcpy(hdiag->data,pdiag->a,pdiag->nz*sizeof(PetscScalar));

    183:   hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0;
    184:   PetscStackCallStandard(HYPRE_IJMatrixAssemble,(ij));
    185:   PetscLogEventEnd(MAT_Convert,A,0,0,0);
    186:   return(0);
    187: }

    191: PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat A,HYPRE_IJMatrix ij)
    192: {
    194:   Mat_MPIAIJ     *pA = (Mat_MPIAIJ*)A->data;
    195:   Mat_SeqAIJ     *pdiag,*poffd;
    196:   PetscInt       i,*garray = pA->garray,*jj,cstart,*pjj;

    198:   hypre_ParCSRMatrix    *par_matrix;
    199:   hypre_AuxParCSRMatrix *aux_matrix;
    200:   hypre_CSRMatrix       *hdiag,*hoffd;

    206:   pdiag = (Mat_SeqAIJ*) pA->A->data;
    207:   poffd = (Mat_SeqAIJ*) pA->B->data;
    208:   /* cstart is only valid for square MPIAIJ layed out in the usual way */
    209:   MatGetOwnershipRange(A,&cstart,NULL);

    211:   PetscLogEventBegin(MAT_Convert,A,0,0,0);
    212:   PetscStackCallStandard(HYPRE_IJMatrixInitialize,(ij));
    213:   par_matrix = (hypre_ParCSRMatrix*)hypre_IJMatrixObject(ij);
    214:   aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij);
    215:   hdiag      = hypre_ParCSRMatrixDiag(par_matrix);
    216:   hoffd      = hypre_ParCSRMatrixOffd(par_matrix);

    218:   /*
    219:        this is the Hack part where we monkey directly with the hypre datastructures
    220:   */
    221:   PetscMemcpy(hdiag->i,pdiag->i,(pA->A->rmap->n + 1)*sizeof(PetscInt));
    222:   /* need to shift the diag column indices (hdiag->j) back to global numbering since hypre is expecting this */
    223:   jj  = (PetscInt*)hdiag->j;
    224:   pjj = (PetscInt*)pdiag->j;
    225:   for (i=0; i<pdiag->nz; i++) jj[i] = cstart + pjj[i];
    226:   PetscMemcpy(hdiag->data,pdiag->a,pdiag->nz*sizeof(PetscScalar));
    227:   PetscMemcpy(hoffd->i,poffd->i,(pA->A->rmap->n + 1)*sizeof(PetscInt));
    228:   /* need to move the offd column indices (hoffd->j) back to global numbering since hypre is expecting this
    229:      If we hacked a hypre a bit more we might be able to avoid this step */
    230:   jj  = (PetscInt*) hoffd->j;
    231:   pjj = (PetscInt*) poffd->j;
    232:   for (i=0; i<poffd->nz; i++) jj[i] = garray[pjj[i]];
    233:   PetscMemcpy(hoffd->data,poffd->a,poffd->nz*sizeof(PetscScalar));

    235:   hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0;
    236:   PetscStackCallStandard(HYPRE_IJMatrixAssemble,(ij));
    237:   PetscLogEventEnd(MAT_Convert,A,0,0,0);
    238:   return(0);
    239: }

    241: /*
    242:     Does NOT copy the data over, instead uses DIRECTLY the pointers from the PETSc MPIAIJ format

    244:     This is UNFINISHED and does NOT work! The problem is that hypre puts the diagonal entry first
    245:     which will corrupt the PETSc data structure if we did this. Need a work around to this problem.
    246: */
    247: #include <_hypre_IJ_mv.h>
    248: #include <HYPRE_IJ_mv.h>

    252: PetscErrorCode MatHYPRE_IJMatrixLink(Mat A,HYPRE_IJMatrix *ij)
    253: {
    254:   PetscErrorCode        ierr;
    255:   PetscInt              rstart,rend,cstart,cend;
    256:   PetscBool             flg;
    257:   hypre_AuxParCSRMatrix *aux_matrix;

    263:   PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&flg);
    264:   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Can only use with PETSc MPIAIJ matrices");
    265:   MatSetUp(A);

    267:   PetscLogEventBegin(MAT_Convert,A,0,0,0);
    268:   rstart = A->rmap->rstart;
    269:   rend   = A->rmap->rend;
    270:   cstart = A->cmap->rstart;
    271:   cend   = A->cmap->rend;
    272:   PetscStackCallStandard(HYPRE_IJMatrixCreate,(PetscObjectComm((PetscObject)A),rstart,rend-1,cstart,cend-1,ij));
    273:   PetscStackCallStandard(HYPRE_IJMatrixSetObjectType,(*ij,HYPRE_PARCSR));

    275:   PetscStackCallStandard(HYPRE_IJMatrixInitialize,(*ij));
    276:   PetscStackCall("hypre_IJMatrixTranslator",aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(*ij));

    278:   hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 0;

    280:   /* this is the Hack part where we monkey directly with the hypre datastructures */

    282:   PetscStackCallStandard(HYPRE_IJMatrixAssemble,(*ij));
    283:   PetscLogEventEnd(MAT_Convert,A,0,0,0);
    284:   return(0);
    285: }

    287: /* -----------------------------------------------------------------------------------------------------------------*/

    289: /*MC
    290:    MATHYPRESTRUCT - MATHYPRESTRUCT = "hyprestruct" - A matrix type to be used for parallel sparse matrices
    291:           based on the hypre HYPRE_StructMatrix.

    293:    Level: intermediate

    295:    Notes: Unlike the more general support for blocks in hypre this allows only one block per process and requires the block
    296:           be defined by a DMDA.

    298:           The matrix needs a DMDA associated with it by either a call to MatSetupDM() or if the matrix is obtained from DMCreateMatrix()

    300: .seealso: MatCreate(), PCPFMG, MatSetupDM(), DMCreateMatrix()
    301: M*/

    306: PetscErrorCode  MatSetValuesLocal_HYPREStruct_3d(Mat mat,PetscInt nrow,const PetscInt irow[],PetscInt ncol,const PetscInt icol[],const PetscScalar y[],InsertMode addv)
    307: {
    308:   PetscErrorCode    ierr;
    309:   PetscInt          i,j,stencil,index[3],row,entries[7];
    310:   const PetscScalar *values = y;
    311:   Mat_HYPREStruct   *ex     = (Mat_HYPREStruct*) mat->data;

    314:   if (PetscUnlikely(ncol >= 7)) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ncol %D >= 7 too large",ncol);
    315:   for (i=0; i<nrow; i++) {
    316:     for (j=0; j<ncol; j++) {
    317:       stencil = icol[j] - irow[i];
    318:       if (!stencil) {
    319:         entries[j] = 3;
    320:       } else if (stencil == -1) {
    321:         entries[j] = 2;
    322:       } else if (stencil == 1) {
    323:         entries[j] = 4;
    324:       } else if (stencil == -ex->gnx) {
    325:         entries[j] = 1;
    326:       } else if (stencil == ex->gnx) {
    327:         entries[j] = 5;
    328:       } else if (stencil == -ex->gnxgny) {
    329:         entries[j] = 0;
    330:       } else if (stencil == ex->gnxgny) {
    331:         entries[j] = 6;
    332:       } else SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Local row %D local column %D have bad stencil %D",irow[i],icol[j],stencil);
    333:     }
    334:     row      = ex->gindices[irow[i]] - ex->rstart;
    335:     index[0] = ex->xs + (row % ex->nx);
    336:     index[1] = ex->ys + ((row/ex->nx) % ex->ny);
    337:     index[2] = ex->zs + (row/(ex->nxny));
    338:     if (addv == ADD_VALUES) {
    339:       PetscStackCallStandard(HYPRE_StructMatrixAddToValues,(ex->hmat,(HYPRE_Int *)index,ncol,(HYPRE_Int *)entries,(PetscScalar*)values));
    340:     } else {
    341:       PetscStackCallStandard(HYPRE_StructMatrixSetValues,(ex->hmat,(HYPRE_Int *)index,ncol,(HYPRE_Int *)entries,(PetscScalar*)values));
    342:     }
    343:     values += ncol;
    344:   }
    345:   return(0);
    346: }

    350: PetscErrorCode  MatZeroRowsLocal_HYPREStruct_3d(Mat mat,PetscInt nrow,const PetscInt irow[],PetscScalar d,Vec x,Vec b)
    351: {
    352:   PetscErrorCode  ierr;
    353:   PetscInt        i,index[3],row,entries[7] = {0,1,2,3,4,5,6};
    354:   PetscScalar     values[7];
    355:   Mat_HYPREStruct *ex = (Mat_HYPREStruct*) mat->data;

    358:   if (x && b) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support");
    359:   PetscMemzero(values,7*sizeof(PetscScalar));
    360:   values[3] = d;
    361:   for (i=0; i<nrow; i++) {
    362:     row      = ex->gindices[irow[i]] - ex->rstart;
    363:     index[0] = ex->xs + (row % ex->nx);
    364:     index[1] = ex->ys + ((row/ex->nx) % ex->ny);
    365:     index[2] = ex->zs + (row/(ex->nxny));
    366:     PetscStackCallStandard(HYPRE_StructMatrixSetValues,(ex->hmat,(HYPRE_Int *)index,7,(HYPRE_Int *)entries,values));
    367:   }
    368:   PetscStackCallStandard(HYPRE_StructMatrixAssemble,(ex->hmat));
    369:   return(0);
    370: }

    374: PetscErrorCode MatZeroEntries_HYPREStruct_3d(Mat mat)
    375: {
    376:   PetscErrorCode  ierr;
    377:   PetscInt        indices[7] = {0,1,2,3,4,5,6};
    378:   Mat_HYPREStruct *ex        = (Mat_HYPREStruct*) mat->data;

    381:   /* hypre has no public interface to do this */
    382:   PetscStackCallStandard(hypre_StructMatrixClearBoxValues,(ex->hmat,&ex->hbox,7,(HYPRE_Int *)indices,0,1));
    383:   PetscStackCallStandard(HYPRE_StructMatrixAssemble,(ex->hmat));
    384:   return(0);
    385: }

    389: static PetscErrorCode  MatSetupDM_HYPREStruct(Mat mat,DM da)
    390: {
    391:   PetscErrorCode         ierr;
    392:   Mat_HYPREStruct        *ex = (Mat_HYPREStruct*) mat->data;
    393:   PetscInt               dim,dof,sw[3],nx,ny,nz,ilower[3],iupper[3],ssize,i;
    394:   DMBoundaryType         px,py,pz;
    395:   DMDAStencilType        st;
    396:   ISLocalToGlobalMapping ltog;

    399:   ex->da = da;
    400:   PetscObjectReference((PetscObject)da);

    402:   DMDAGetInfo(ex->da,&dim,0,0,0,0,0,0,&dof,&sw[0],&px,&py,&pz,&st);
    403:   DMDAGetCorners(ex->da,&ilower[0],&ilower[1],&ilower[2],&iupper[0],&iupper[1],&iupper[2]);
    404:   iupper[0] += ilower[0] - 1;
    405:   iupper[1] += ilower[1] - 1;
    406:   iupper[2] += ilower[2] - 1;

    408:   /* the hypre_Box is used to zero out the matrix entries in MatZeroValues() */
    409:   ex->hbox.imin[0] = ilower[0];
    410:   ex->hbox.imin[1] = ilower[1];
    411:   ex->hbox.imin[2] = ilower[2];
    412:   ex->hbox.imax[0] = iupper[0];
    413:   ex->hbox.imax[1] = iupper[1];
    414:   ex->hbox.imax[2] = iupper[2];

    416:   /* create the hypre grid object and set its information */
    417:   if (dof > 1) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Currently only support for scalar problems");
    418:   if (px || py || pz) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Ask us to add periodic support by calling HYPRE_StructGridSetPeriodic()");
    419:   PetscStackCallStandard(HYPRE_StructGridCreate,(ex->hcomm,dim,&ex->hgrid));
    420:   PetscStackCallStandard(HYPRE_StructGridSetExtents,(ex->hgrid,(HYPRE_Int *)ilower,(HYPRE_Int *)iupper));
    421:   PetscStackCallStandard(HYPRE_StructGridAssemble,(ex->hgrid));

    423:   sw[1] = sw[0];
    424:   sw[2] = sw[1];
    425:   PetscStackCallStandard(HYPRE_StructGridSetNumGhost,(ex->hgrid,(HYPRE_Int *)sw));

    427:   /* create the hypre stencil object and set its information */
    428:   if (sw[0] > 1) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Ask us to add support for wider stencils");
    429:   if (st == DMDA_STENCIL_BOX) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Ask us to add support for box stencils");
    430:   if (dim == 1) {
    431:     PetscInt offsets[3][1] = {{-1},{0},{1}};
    432:     ssize = 3;
    433:     PetscStackCallStandard(HYPRE_StructStencilCreate,(dim,ssize,&ex->hstencil));
    434:     for (i=0; i<ssize; i++) {
    435:       PetscStackCallStandard(HYPRE_StructStencilSetElement,(ex->hstencil,i,(HYPRE_Int *)offsets[i]));
    436:     }
    437:   } else if (dim == 2) {
    438:     PetscInt offsets[5][2] = {{0,-1},{-1,0},{0,0},{1,0},{0,1}};
    439:     ssize = 5;
    440:     PetscStackCallStandard(HYPRE_StructStencilCreate,(dim,ssize,&ex->hstencil));
    441:     for (i=0; i<ssize; i++) {
    442:       PetscStackCallStandard(HYPRE_StructStencilSetElement,(ex->hstencil,i,(HYPRE_Int *)offsets[i]));
    443:     }
    444:   } else if (dim == 3) {
    445:     PetscInt offsets[7][3] = {{0,0,-1},{0,-1,0},{-1,0,0},{0,0,0},{1,0,0},{0,1,0},{0,0,1}};
    446:     ssize = 7;
    447:     PetscStackCallStandard(HYPRE_StructStencilCreate,(dim,ssize,&ex->hstencil));
    448:     for (i=0; i<ssize; i++) {
    449:       PetscStackCallStandard(HYPRE_StructStencilSetElement,(ex->hstencil,i,(HYPRE_Int *)offsets[i]));
    450:     }
    451:   }

    453:   /* create the HYPRE vector for rhs and solution */
    454:   PetscStackCallStandard(HYPRE_StructVectorCreate,(ex->hcomm,ex->hgrid,&ex->hb));
    455:   PetscStackCallStandard(HYPRE_StructVectorCreate,(ex->hcomm,ex->hgrid,&ex->hx));
    456:   PetscStackCallStandard(HYPRE_StructVectorInitialize,(ex->hb));
    457:   PetscStackCallStandard(HYPRE_StructVectorInitialize,(ex->hx));
    458:   PetscStackCallStandard(HYPRE_StructVectorAssemble,(ex->hb));
    459:   PetscStackCallStandard(HYPRE_StructVectorAssemble,(ex->hx));

    461:   /* create the hypre matrix object and set its information */
    462:   PetscStackCallStandard(HYPRE_StructMatrixCreate,(ex->hcomm,ex->hgrid,ex->hstencil,&ex->hmat));
    463:   PetscStackCallStandard(HYPRE_StructGridDestroy,(ex->hgrid));
    464:   PetscStackCallStandard(HYPRE_StructStencilDestroy,(ex->hstencil));
    465:   if (ex->needsinitialization) {
    466:     PetscStackCallStandard(HYPRE_StructMatrixInitialize,(ex->hmat));
    467:     ex->needsinitialization = PETSC_FALSE;
    468:   }

    470:   /* set the global and local sizes of the matrix */
    471:   DMDAGetCorners(da,0,0,0,&nx,&ny,&nz);
    472:   MatSetSizes(mat,dof*nx*ny*nz,dof*nx*ny*nz,PETSC_DECIDE,PETSC_DECIDE);
    473:   PetscLayoutSetBlockSize(mat->rmap,1);
    474:   PetscLayoutSetBlockSize(mat->cmap,1);
    475:   PetscLayoutSetUp(mat->rmap);
    476:   PetscLayoutSetUp(mat->cmap);

    478:   if (dim == 3) {
    479:     mat->ops->setvalueslocal = MatSetValuesLocal_HYPREStruct_3d;
    480:     mat->ops->zerorowslocal  = MatZeroRowsLocal_HYPREStruct_3d;
    481:     mat->ops->zeroentries    = MatZeroEntries_HYPREStruct_3d;

    483:     MatZeroEntries_HYPREStruct_3d(mat);
    484:   } else SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Only support for 3d DMDA currently");

    486:   /* get values that will be used repeatedly in MatSetValuesLocal() and MatZeroRowsLocal() repeatedly */
    487:   MatGetOwnershipRange(mat,&ex->rstart,NULL);
    488:   DMGetLocalToGlobalMapping(ex->da,&ltog);
    489:   ISLocalToGlobalMappingGetIndices(ltog, (const PetscInt **) &ex->gindices);
    490:   DMDAGetGhostCorners(ex->da,0,0,0,&ex->gnx,&ex->gnxgny,0);
    491:   ex->gnxgny *= ex->gnx;
    492:   DMDAGetCorners(ex->da,&ex->xs,&ex->ys,&ex->zs,&ex->nx,&ex->ny,0);
    493:   ex->nxny    = ex->nx*ex->ny;
    494:   return(0);
    495: }

    499: PetscErrorCode MatMult_HYPREStruct(Mat A,Vec x,Vec y)
    500: {
    501:   PetscErrorCode  ierr;
    502:   PetscScalar     *xx,*yy;
    503:   PetscInt        ilower[3],iupper[3];
    504:   Mat_HYPREStruct *mx = (Mat_HYPREStruct*)(A->data);

    507:   DMDAGetCorners(mx->da,&ilower[0],&ilower[1],&ilower[2],&iupper[0],&iupper[1],&iupper[2]);

    509:   iupper[0] += ilower[0] - 1;
    510:   iupper[1] += ilower[1] - 1;
    511:   iupper[2] += ilower[2] - 1;

    513:   /* copy x values over to hypre */
    514:   PetscStackCallStandard(HYPRE_StructVectorSetConstantValues,(mx->hb,0.0));
    515:   VecGetArray(x,&xx);
    516:   PetscStackCallStandard(HYPRE_StructVectorSetBoxValues,(mx->hb,(HYPRE_Int *)ilower,(HYPRE_Int *)iupper,xx));
    517:   VecRestoreArray(x,&xx);
    518:   PetscStackCallStandard(HYPRE_StructVectorAssemble,(mx->hb));
    519:   PetscStackCallStandard(HYPRE_StructMatrixMatvec,(1.0,mx->hmat,mx->hb,0.0,mx->hx));

    521:   /* copy solution values back to PETSc */
    522:   VecGetArray(y,&yy);
    523:   PetscStackCallStandard(HYPRE_StructVectorGetBoxValues,(mx->hx,(HYPRE_Int *)ilower,(HYPRE_Int *)iupper,yy));
    524:   VecRestoreArray(y,&yy);
    525:   return(0);
    526: }

    530: PetscErrorCode MatAssemblyEnd_HYPREStruct(Mat mat,MatAssemblyType mode)
    531: {
    532:   Mat_HYPREStruct *ex = (Mat_HYPREStruct*) mat->data;
    533:   PetscErrorCode  ierr;

    536:   PetscStackCallStandard(HYPRE_StructMatrixAssemble,(ex->hmat));
    537:   /* PetscStackCallStandard(HYPRE_StructMatrixPrint,("dummy",ex->hmat,0)); */
    538:   return(0);
    539: }

    543: PetscErrorCode MatZeroEntries_HYPREStruct(Mat mat)
    544: {
    546:   /* before the DMDA is set to the matrix the zero doesn't need to do anything */
    547:   return(0);
    548: }

    553: PetscErrorCode MatDestroy_HYPREStruct(Mat mat)
    554: {
    555:   Mat_HYPREStruct *ex = (Mat_HYPREStruct*) mat->data;
    556:   PetscErrorCode  ierr;

    559:   PetscStackCallStandard(HYPRE_StructMatrixDestroy,(ex->hmat));
    560:   PetscStackCallStandard(HYPRE_StructVectorDestroy,(ex->hx));
    561:   PetscStackCallStandard(HYPRE_StructVectorDestroy,(ex->hb));
    562:   return(0);
    563: }

    568: PETSC_EXTERN PetscErrorCode MatCreate_HYPREStruct(Mat B)
    569: {
    570:   Mat_HYPREStruct *ex;
    571:   PetscErrorCode  ierr;

    574:   PetscNewLog(B,&ex);
    575:   B->data      = (void*)ex;
    576:   B->rmap->bs  = 1;
    577:   B->assembled = PETSC_FALSE;

    579:   B->insertmode = NOT_SET_VALUES;

    581:   B->ops->assemblyend = MatAssemblyEnd_HYPREStruct;
    582:   B->ops->mult        = MatMult_HYPREStruct;
    583:   B->ops->zeroentries = MatZeroEntries_HYPREStruct;
    584:   B->ops->destroy     = MatDestroy_HYPREStruct;

    586:   ex->needsinitialization = PETSC_TRUE;

    588:   MPI_Comm_dup(PetscObjectComm((PetscObject)B),&(ex->hcomm));
    589:   PetscObjectComposeFunction((PetscObject)B,"MatSetupDM_C",MatSetupDM_HYPREStruct);
    590:   PetscObjectChangeTypeName((PetscObject)B,MATHYPRESTRUCT);
    591:   return(0);
    592: }

    594: /*MC
    595:    MATHYPRESSTRUCT - MATHYPRESSTRUCT = "hypresstruct" - A matrix type to be used for parallel sparse matrices
    596:           based on the hypre HYPRE_SStructMatrix.

    599:    Level: intermediate

    601:    Notes: Unlike hypre's general semi-struct object consisting of a collection of structured-grid objects and unstructured
    602:           grid objects, we will restrict the semi-struct objects to consist of only structured-grid components.

    604:           Unlike the more general support for parts and blocks in hypre this allows only one part, and one block per process and requires the block
    605:           be defined by a DMDA.

    607:           The matrix needs a DMDA associated with it by either a call to MatSetupDM() or if the matrix is obtained from DMCreateMatrix()

    609: M*/

    613: PetscErrorCode  MatSetValuesLocal_HYPRESStruct_3d(Mat mat,PetscInt nrow,const PetscInt irow[],PetscInt ncol,const PetscInt icol[],const PetscScalar y[],InsertMode addv)
    614: {
    615:   PetscErrorCode    ierr;
    616:   PetscInt          i,j,stencil,index[3];
    617:   const PetscScalar *values = y;
    618:   Mat_HYPRESStruct  *ex     = (Mat_HYPRESStruct*) mat->data;

    620:   PetscInt part = 0;          /* Petsc sstruct interface only allows 1 part */
    621:   PetscInt ordering;
    622:   PetscInt grid_rank, to_grid_rank;
    623:   PetscInt var_type, to_var_type;
    624:   PetscInt to_var_entry = 0;

    626:   PetscInt nvars= ex->nvars;
    627:   PetscInt row,*entries;

    630:   PetscMalloc1(7*nvars,&entries);
    631:   ordering= ex->dofs_order;  /* ordering= 0   nodal ordering
    632:                                           1   variable ordering */
    633:   /* stencil entries are orderer by variables: var0_stencil0, var0_stencil1, ..., var0_stencil6, var1_stencil0, var1_stencil1, ...  */

    635:   if (!ordering) {
    636:     for (i=0; i<nrow; i++) {
    637:       grid_rank= irow[i]/nvars;
    638:       var_type = (irow[i] % nvars);

    640:       for (j=0; j<ncol; j++) {
    641:         to_grid_rank= icol[j]/nvars;
    642:         to_var_type = (icol[j] % nvars);

    644:         to_var_entry= to_var_entry*7;
    645:         entries[j]  = to_var_entry;

    647:         stencil = to_grid_rank-grid_rank;
    648:         if (!stencil) {
    649:           entries[j] += 3;
    650:         } else if (stencil == -1) {
    651:           entries[j] += 2;
    652:         } else if (stencil == 1) {
    653:           entries[j] += 4;
    654:         } else if (stencil == -ex->gnx) {
    655:           entries[j] += 1;
    656:         } else if (stencil == ex->gnx) {
    657:           entries[j] += 5;
    658:         } else if (stencil == -ex->gnxgny) {
    659:           entries[j] += 0;
    660:         } else if (stencil == ex->gnxgny) {
    661:           entries[j] += 6;
    662:         } else SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Local row %D local column %D have bad stencil %D",irow[i],icol[j],stencil);
    663:       }

    665:       row      = ex->gindices[grid_rank] - ex->rstart;
    666:       index[0] = ex->xs + (row % ex->nx);
    667:       index[1] = ex->ys + ((row/ex->nx) % ex->ny);
    668:       index[2] = ex->zs + (row/(ex->nxny));

    670:       if (addv == ADD_VALUES) {
    671:         PetscStackCallStandard(HYPRE_SStructMatrixAddToValues,(ex->ss_mat,part,(HYPRE_Int *)index,var_type,ncol,(HYPRE_Int *)entries,(PetscScalar*)values));
    672:       } else {
    673:         PetscStackCallStandard(HYPRE_SStructMatrixSetValues,(ex->ss_mat,part,(HYPRE_Int *)index,var_type,ncol,(HYPRE_Int *)entries,(PetscScalar*)values));
    674:       }
    675:       values += ncol;
    676:     }
    677:   } else {
    678:     for (i=0; i<nrow; i++) {
    679:       var_type = irow[i]/(ex->gnxgnygnz);
    680:       grid_rank= irow[i] - var_type*(ex->gnxgnygnz);

    682:       for (j=0; j<ncol; j++) {
    683:         to_var_type = icol[j]/(ex->gnxgnygnz);
    684:         to_grid_rank= icol[j] - to_var_type*(ex->gnxgnygnz);

    686:         to_var_entry= to_var_entry*7;
    687:         entries[j]  = to_var_entry;

    689:         stencil = to_grid_rank-grid_rank;
    690:         if (!stencil) {
    691:           entries[j] += 3;
    692:         } else if (stencil == -1) {
    693:           entries[j] += 2;
    694:         } else if (stencil == 1) {
    695:           entries[j] += 4;
    696:         } else if (stencil == -ex->gnx) {
    697:           entries[j] += 1;
    698:         } else if (stencil == ex->gnx) {
    699:           entries[j] += 5;
    700:         } else if (stencil == -ex->gnxgny) {
    701:           entries[j] += 0;
    702:         } else if (stencil == ex->gnxgny) {
    703:           entries[j] += 6;
    704:         } else SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Local row %D local column %D have bad stencil %D",irow[i],icol[j],stencil);
    705:       }

    707:       row      = ex->gindices[grid_rank] - ex->rstart;
    708:       index[0] = ex->xs + (row % ex->nx);
    709:       index[1] = ex->ys + ((row/ex->nx) % ex->ny);
    710:       index[2] = ex->zs + (row/(ex->nxny));

    712:       if (addv == ADD_VALUES) {
    713:         PetscStackCallStandard(HYPRE_SStructMatrixAddToValues,(ex->ss_mat,part,(HYPRE_Int *)index,var_type,ncol,(HYPRE_Int *)entries,(PetscScalar*)values));
    714:       } else {
    715:         PetscStackCallStandard(HYPRE_SStructMatrixSetValues,(ex->ss_mat,part,(HYPRE_Int *)index,var_type,ncol,(HYPRE_Int *)entries,(PetscScalar*)values));
    716:       }
    717:       values += ncol;
    718:     }
    719:   }
    720:   PetscFree(entries);
    721:   return(0);
    722: }

    726: PetscErrorCode  MatZeroRowsLocal_HYPRESStruct_3d(Mat mat,PetscInt nrow,const PetscInt irow[],PetscScalar d,Vec x,Vec b)
    727: {
    728:   PetscErrorCode   ierr;
    729:   PetscInt         i,index[3];
    730:   PetscScalar      **values;
    731:   Mat_HYPRESStruct *ex = (Mat_HYPRESStruct*) mat->data;

    733:   PetscInt part     = 0;      /* Petsc sstruct interface only allows 1 part */
    734:   PetscInt ordering = ex->dofs_order;
    735:   PetscInt grid_rank;
    736:   PetscInt var_type;
    737:   PetscInt nvars= ex->nvars;
    738:   PetscInt row,*entries;

    741:   if (x && b) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support");
    742:   PetscMalloc1(7*nvars,&entries);

    744:   PetscMalloc1(nvars,&values);
    745:   PetscMalloc1(7*nvars*nvars,&values[0]);
    746:   for (i=1; i<nvars; i++) {
    747:     values[i] = values[i-1] + nvars*7;
    748:   }

    750:   for (i=0; i< nvars; i++) {
    751:     PetscMemzero(values[i],nvars*7*sizeof(PetscScalar));
    752:     *(values[i]+3) = d;
    753:   }

    755:   for (i= 0; i< nvars*7; i++) entries[i] = i;

    757:   if (!ordering) {
    758:     for (i=0; i<nrow; i++) {
    759:       grid_rank = irow[i] / nvars;
    760:       var_type  =(irow[i] % nvars);

    762:       row      = ex->gindices[grid_rank] - ex->rstart;
    763:       index[0] = ex->xs + (row % ex->nx);
    764:       index[1] = ex->ys + ((row/ex->nx) % ex->ny);
    765:       index[2] = ex->zs + (row/(ex->nxny));
    766:       PetscStackCallStandard(HYPRE_SStructMatrixSetValues,(ex->ss_mat,part,(HYPRE_Int *)index,var_type,7*nvars,(HYPRE_Int *)entries,values[var_type]));
    767:     }
    768:   } else {
    769:     for (i=0; i<nrow; i++) {
    770:       var_type = irow[i]/(ex->gnxgnygnz);
    771:       grid_rank= irow[i] - var_type*(ex->gnxgnygnz);

    773:       row      = ex->gindices[grid_rank] - ex->rstart;
    774:       index[0] = ex->xs + (row % ex->nx);
    775:       index[1] = ex->ys + ((row/ex->nx) % ex->ny);
    776:       index[2] = ex->zs + (row/(ex->nxny));
    777:       PetscStackCallStandard(HYPRE_SStructMatrixSetValues,(ex->ss_mat,part,(HYPRE_Int *)index,var_type,7*nvars,(HYPRE_Int *)entries,values[var_type]));
    778:     }
    779:   }
    780:   PetscStackCallStandard(HYPRE_SStructMatrixAssemble,(ex->ss_mat));
    781:   PetscFree(values[0]);
    782:   PetscFree(values);
    783:   PetscFree(entries);
    784:   return(0);
    785: }

    789: PetscErrorCode MatZeroEntries_HYPRESStruct_3d(Mat mat)
    790: {
    791:   PetscErrorCode   ierr;
    792:   Mat_HYPRESStruct *ex  = (Mat_HYPRESStruct*) mat->data;
    793:   PetscInt         nvars= ex->nvars;
    794:   PetscInt         size;
    795:   PetscInt         part= 0;   /* only one part */

    798:   size = ((ex->hbox.imax[0])-(ex->hbox.imin[0])+1)*((ex->hbox.imax[1])-(ex->hbox.imin[1])+1)*((ex->hbox.imax[2])-(ex->hbox.imin[2])+1);
    799:   {
    800:     PetscInt    i,*entries,iupper[3],ilower[3];
    801:     PetscScalar *values;

    804:     for (i= 0; i< 3; i++) {
    805:       ilower[i]= ex->hbox.imin[i];
    806:       iupper[i]= ex->hbox.imax[i];
    807:     }

    809:     PetscMalloc2(nvars*7,&entries,nvars*7*size,&values);
    810:     for (i= 0; i< nvars*7; i++) entries[i]= i;
    811:     PetscMemzero(values,nvars*7*size*sizeof(PetscScalar));

    813:     for (i= 0; i< nvars; i++) {
    814:       PetscStackCallStandard(HYPRE_SStructMatrixSetBoxValues,(ex->ss_mat,part,(HYPRE_Int *)ilower,(HYPRE_Int *)iupper,i,nvars*7,(HYPRE_Int *)entries,values));
    815:     }
    816:     PetscFree2(entries,values);
    817:   }
    818:   PetscStackCallStandard(HYPRE_SStructMatrixAssemble,(ex->ss_mat));
    819:   return(0);
    820: }

    825: static PetscErrorCode  MatSetupDM_HYPRESStruct(Mat mat,DM da)
    826: {
    827:   PetscErrorCode         ierr;
    828:   Mat_HYPRESStruct       *ex = (Mat_HYPRESStruct*) mat->data;
    829:   PetscInt               dim,dof,sw[3],nx,ny,nz;
    830:   PetscInt               ilower[3],iupper[3],ssize,i;
    831:   DMBoundaryType         px,py,pz;
    832:   DMDAStencilType        st;
    833:   PetscInt               nparts= 1;  /* assuming only one part */
    834:   PetscInt               part  = 0;
    835:   ISLocalToGlobalMapping ltog;
    837:   ex->da = da;
    838:   PetscObjectReference((PetscObject)da);

    840:   DMDAGetInfo(ex->da,&dim,0,0,0,0,0,0,&dof,&sw[0],&px,&py,&pz,&st);
    841:   DMDAGetCorners(ex->da,&ilower[0],&ilower[1],&ilower[2],&iupper[0],&iupper[1],&iupper[2]);
    842:   iupper[0] += ilower[0] - 1;
    843:   iupper[1] += ilower[1] - 1;
    844:   iupper[2] += ilower[2] - 1;
    845:   /* the hypre_Box is used to zero out the matrix entries in MatZeroValues() */
    846:   ex->hbox.imin[0] = ilower[0];
    847:   ex->hbox.imin[1] = ilower[1];
    848:   ex->hbox.imin[2] = ilower[2];
    849:   ex->hbox.imax[0] = iupper[0];
    850:   ex->hbox.imax[1] = iupper[1];
    851:   ex->hbox.imax[2] = iupper[2];

    853:   ex->dofs_order = 0;

    855:   /* assuming that the same number of dofs on each gridpoint. Also assume all cell-centred based */
    856:   ex->nvars= dof;

    858:   /* create the hypre grid object and set its information */
    859:   if (px || py || pz) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Ask us to add periodic support by calling HYPRE_SStructGridSetPeriodic()");
    860:   PetscStackCallStandard(HYPRE_SStructGridCreate,(ex->hcomm,dim,nparts,&ex->ss_grid));

    862:   PetscStackCallStandard(HYPRE_SStructGridSetExtents,(ex->ss_grid,part,ex->hbox.imin,ex->hbox.imax));

    864:   {
    865:     HYPRE_SStructVariable *vartypes;
    866:     PetscMalloc1(ex->nvars,&vartypes);
    867:     for (i= 0; i< ex->nvars; i++) vartypes[i]= HYPRE_SSTRUCT_VARIABLE_CELL;
    868:     PetscStackCallStandard(HYPRE_SStructGridSetVariables,(ex->ss_grid, part, ex->nvars,vartypes));
    869:     PetscFree(vartypes);
    870:   }
    871:   PetscStackCallStandard(HYPRE_SStructGridAssemble,(ex->ss_grid));

    873:   sw[1] = sw[0];
    874:   sw[2] = sw[1];
    875:   /* PetscStackCallStandard(HYPRE_SStructGridSetNumGhost,(ex->ss_grid,sw)); */

    877:   /* create the hypre stencil object and set its information */
    878:   if (sw[0] > 1) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Ask us to add support for wider stencils");
    879:   if (st == DMDA_STENCIL_BOX) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Ask us to add support for box stencils");

    881:   if (dim == 1) {
    882:     PetscInt offsets[3][1] = {{-1},{0},{1}};
    883:     PetscInt j, cnt;

    885:     ssize = 3*(ex->nvars);
    886:     PetscStackCallStandard(HYPRE_SStructStencilCreate,(dim,ssize,&ex->ss_stencil));
    887:     cnt= 0;
    888:     for (i = 0; i < (ex->nvars); i++) {
    889:       for (j = 0; j < 3; j++) {
    890:         PetscStackCallStandard(HYPRE_SStructStencilSetEntry,(ex->ss_stencil, cnt, (HYPRE_Int *)offsets[j], i));
    891:         cnt++;
    892:       }
    893:     }
    894:   } else if (dim == 2) {
    895:     PetscInt offsets[5][2] = {{0,-1},{-1,0},{0,0},{1,0},{0,1}};
    896:     PetscInt j, cnt;

    898:     ssize = 5*(ex->nvars);
    899:     PetscStackCallStandard(HYPRE_SStructStencilCreate,(dim,ssize,&ex->ss_stencil));
    900:     cnt= 0;
    901:     for (i= 0; i< (ex->nvars); i++) {
    902:       for (j= 0; j< 5; j++) {
    903:         PetscStackCallStandard(HYPRE_SStructStencilSetEntry,(ex->ss_stencil, cnt, (HYPRE_Int *)offsets[j], i));
    904:         cnt++;
    905:       }
    906:     }
    907:   } else if (dim == 3) {
    908:     PetscInt offsets[7][3] = {{0,0,-1},{0,-1,0},{-1,0,0},{0,0,0},{1,0,0},{0,1,0},{0,0,1}};
    909:     PetscInt j, cnt;

    911:     ssize = 7*(ex->nvars);
    912:     PetscStackCallStandard(HYPRE_SStructStencilCreate,(dim,ssize,&ex->ss_stencil));
    913:     cnt= 0;
    914:     for (i= 0; i< (ex->nvars); i++) {
    915:       for (j= 0; j< 7; j++) {
    916:         PetscStackCallStandard(HYPRE_SStructStencilSetEntry,(ex->ss_stencil, cnt, (HYPRE_Int *)offsets[j], i));
    917:         cnt++;
    918:       }
    919:     }
    920:   }

    922:   /* create the HYPRE graph */
    923:   PetscStackCallStandard(HYPRE_SStructGraphCreate,(ex->hcomm, ex->ss_grid, &(ex->ss_graph)));

    925:   /* set the stencil graph. Note that each variable has the same graph. This means that each
    926:      variable couples to all the other variable and with the same stencil pattern. */
    927:   for (i= 0; i< (ex->nvars); i++) {
    928:     PetscStackCallStandard(HYPRE_SStructGraphSetStencil,(ex->ss_graph,part,i,ex->ss_stencil));
    929:   }
    930:   PetscStackCallStandard(HYPRE_SStructGraphAssemble,(ex->ss_graph));

    932:   /* create the HYPRE sstruct vectors for rhs and solution */
    933:   PetscStackCallStandard(HYPRE_SStructVectorCreate,(ex->hcomm,ex->ss_grid,&ex->ss_b));
    934:   PetscStackCallStandard(HYPRE_SStructVectorCreate,(ex->hcomm,ex->ss_grid,&ex->ss_x));
    935:   PetscStackCallStandard(HYPRE_SStructVectorInitialize,(ex->ss_b));
    936:   PetscStackCallStandard(HYPRE_SStructVectorInitialize,(ex->ss_x));
    937:   PetscStackCallStandard(HYPRE_SStructVectorAssemble,(ex->ss_b));
    938:   PetscStackCallStandard(HYPRE_SStructVectorAssemble,(ex->ss_x));

    940:   /* create the hypre matrix object and set its information */
    941:   PetscStackCallStandard(HYPRE_SStructMatrixCreate,(ex->hcomm,ex->ss_graph,&ex->ss_mat));
    942:   PetscStackCallStandard(HYPRE_SStructGridDestroy,(ex->ss_grid));
    943:   PetscStackCallStandard(HYPRE_SStructStencilDestroy,(ex->ss_stencil));
    944:   if (ex->needsinitialization) {
    945:     PetscStackCallStandard(HYPRE_SStructMatrixInitialize,(ex->ss_mat));
    946:     ex->needsinitialization = PETSC_FALSE;
    947:   }

    949:   /* set the global and local sizes of the matrix */
    950:   DMDAGetCorners(da,0,0,0,&nx,&ny,&nz);
    951:   MatSetSizes(mat,dof*nx*ny*nz,dof*nx*ny*nz,PETSC_DECIDE,PETSC_DECIDE);
    952:   PetscLayoutSetBlockSize(mat->rmap,1);
    953:   PetscLayoutSetBlockSize(mat->cmap,1);
    954:   PetscLayoutSetUp(mat->rmap);
    955:   PetscLayoutSetUp(mat->cmap);

    957:   if (dim == 3) {
    958:     mat->ops->setvalueslocal = MatSetValuesLocal_HYPRESStruct_3d;
    959:     mat->ops->zerorowslocal  = MatZeroRowsLocal_HYPRESStruct_3d;
    960:     mat->ops->zeroentries    = MatZeroEntries_HYPRESStruct_3d;

    962:     MatZeroEntries_HYPRESStruct_3d(mat);
    963:   } else SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Only support for 3d DMDA currently");

    965:   /* get values that will be used repeatedly in MatSetValuesLocal() and MatZeroRowsLocal() repeatedly */
    966:   MatGetOwnershipRange(mat,&ex->rstart,NULL);
    967:   DMGetLocalToGlobalMapping(ex->da,&ltog);
    968:   ISLocalToGlobalMappingGetIndices(ltog, (const PetscInt **) &ex->gindices);
    969:   DMDAGetGhostCorners(ex->da,0,0,0,&ex->gnx,&ex->gnxgny,&ex->gnxgnygnz);

    971:   ex->gnxgny    *= ex->gnx;
    972:   ex->gnxgnygnz *= ex->gnxgny;

    974:   DMDAGetCorners(ex->da,&ex->xs,&ex->ys,&ex->zs,&ex->nx,&ex->ny,&ex->nz);

    976:   ex->nxny   = ex->nx*ex->ny;
    977:   ex->nxnynz = ex->nz*ex->nxny;
    978:   return(0);
    979: }

    983: PetscErrorCode MatMult_HYPRESStruct(Mat A,Vec x,Vec y)
    984: {
    985:   PetscErrorCode   ierr;
    986:   PetscScalar      *xx,*yy;
    987:   PetscInt         ilower[3],iupper[3];
    988:   Mat_HYPRESStruct *mx     = (Mat_HYPRESStruct*)(A->data);
    989:   PetscInt         ordering= mx->dofs_order;
    990:   PetscInt         nvars   = mx->nvars;
    991:   PetscInt         part    = 0;
    992:   PetscInt         size;
    993:   PetscInt         i;

    996:   DMDAGetCorners(mx->da,&ilower[0],&ilower[1],&ilower[2],&iupper[0],&iupper[1],&iupper[2]);
    997:   iupper[0] += ilower[0] - 1;
    998:   iupper[1] += ilower[1] - 1;
    999:   iupper[2] += ilower[2] - 1;

    1001:   size= 1;
    1002:   for (i = 0; i < 3; i++) size *= (iupper[i]-ilower[i]+1);

    1004:   /* copy x values over to hypre for variable ordering */
    1005:   if (ordering) {
    1006:     PetscStackCallStandard(HYPRE_SStructVectorSetConstantValues,(mx->ss_b,0.0));
    1007:     VecGetArray(x,&xx);
    1008:     for (i= 0; i< nvars; i++) {
    1009:       PetscStackCallStandard(HYPRE_SStructVectorSetBoxValues,(mx->ss_b,part,(HYPRE_Int *)ilower,(HYPRE_Int *)iupper,i,xx+(size*i)));
    1010:     }
    1011:     VecRestoreArray(x,&xx);
    1012:     PetscStackCallStandard(HYPRE_SStructVectorAssemble,(mx->ss_b));
    1013:     PetscStackCallStandard(HYPRE_SStructMatrixMatvec,(1.0,mx->ss_mat,mx->ss_b,0.0,mx->ss_x));

    1015:     /* copy solution values back to PETSc */
    1016:     VecGetArray(y,&yy);
    1017:     for (i= 0; i< nvars; i++) {
    1018:       PetscStackCallStandard(HYPRE_SStructVectorGetBoxValues,(mx->ss_x,part,(HYPRE_Int *)ilower,(HYPRE_Int *)iupper,i,yy+(size*i)));
    1019:     }
    1020:     VecRestoreArray(y,&yy);
    1021:   } else {      /* nodal ordering must be mapped to variable ordering for sys_pfmg */
    1022:     PetscScalar *z;
    1023:     PetscInt    j, k;

    1025:     PetscMalloc1(nvars*size,&z);
    1026:     PetscStackCallStandard(HYPRE_SStructVectorSetConstantValues,(mx->ss_b,0.0));
    1027:     VecGetArray(x,&xx);

    1029:     /* transform nodal to hypre's variable ordering for sys_pfmg */
    1030:     for (i= 0; i< size; i++) {
    1031:       k= i*nvars;
    1032:       for (j= 0; j< nvars; j++) z[j*size+i]= xx[k+j];
    1033:     }
    1034:     for (i= 0; i< nvars; i++) {
    1035:       PetscStackCallStandard(HYPRE_SStructVectorSetBoxValues,(mx->ss_b,part,(HYPRE_Int *)ilower,(HYPRE_Int *)iupper,i,z+(size*i)));
    1036:     }
    1037:     VecRestoreArray(x,&xx);
    1038:     PetscStackCallStandard(HYPRE_SStructVectorAssemble,(mx->ss_b));
    1039:     PetscStackCallStandard(HYPRE_SStructMatrixMatvec,(1.0,mx->ss_mat,mx->ss_b,0.0,mx->ss_x));

    1041:     /* copy solution values back to PETSc */
    1042:     VecGetArray(y,&yy);
    1043:     for (i= 0; i< nvars; i++) {
    1044:       PetscStackCallStandard(HYPRE_SStructVectorGetBoxValues,(mx->ss_x,part,(HYPRE_Int *)ilower,(HYPRE_Int *)iupper,i,z+(size*i)));
    1045:     }
    1046:     /* transform hypre's variable ordering for sys_pfmg to nodal ordering */
    1047:     for (i= 0; i< size; i++) {
    1048:       k= i*nvars;
    1049:       for (j= 0; j< nvars; j++) yy[k+j]= z[j*size+i];
    1050:     }
    1051:     VecRestoreArray(y,&yy);
    1052:     PetscFree(z);
    1053:   }
    1054:   return(0);
    1055: }

    1059: PetscErrorCode MatAssemblyEnd_HYPRESStruct(Mat mat,MatAssemblyType mode)
    1060: {
    1061:   Mat_HYPRESStruct *ex = (Mat_HYPRESStruct*) mat->data;
    1062:   PetscErrorCode   ierr;

    1065:   PetscStackCallStandard(HYPRE_SStructMatrixAssemble,(ex->ss_mat));
    1066:   return(0);
    1067: }

    1071: PetscErrorCode MatZeroEntries_HYPRESStruct(Mat mat)
    1072: {
    1074:   /* before the DMDA is set to the matrix the zero doesn't need to do anything */
    1075:   return(0);
    1076: }

    1081: PetscErrorCode MatDestroy_HYPRESStruct(Mat mat)
    1082: {
    1083:   Mat_HYPRESStruct *ex = (Mat_HYPRESStruct*) mat->data;
    1084:   PetscErrorCode   ierr;

    1087:   PetscStackCallStandard(HYPRE_SStructGraphDestroy,(ex->ss_graph));
    1088:   PetscStackCallStandard(HYPRE_SStructMatrixDestroy,(ex->ss_mat));
    1089:   PetscStackCallStandard(HYPRE_SStructVectorDestroy,(ex->ss_x));
    1090:   PetscStackCallStandard(HYPRE_SStructVectorDestroy,(ex->ss_b));
    1091:   return(0);
    1092: }

    1096: PETSC_EXTERN PetscErrorCode MatCreate_HYPRESStruct(Mat B)
    1097: {
    1098:   Mat_HYPRESStruct *ex;
    1099:   PetscErrorCode   ierr;

    1102:   PetscNewLog(B,&ex);
    1103:   B->data      = (void*)ex;
    1104:   B->rmap->bs  = 1;
    1105:   B->assembled = PETSC_FALSE;

    1107:   B->insertmode = NOT_SET_VALUES;

    1109:   B->ops->assemblyend = MatAssemblyEnd_HYPRESStruct;
    1110:   B->ops->mult        = MatMult_HYPRESStruct;
    1111:   B->ops->zeroentries = MatZeroEntries_HYPRESStruct;
    1112:   B->ops->destroy     = MatDestroy_HYPRESStruct;

    1114:   ex->needsinitialization = PETSC_TRUE;

    1116:   MPI_Comm_dup(PetscObjectComm((PetscObject)B),&(ex->hcomm));
    1117:   PetscObjectComposeFunction((PetscObject)B,"MatSetupDM_C",MatSetupDM_HYPRESStruct);
    1118:   PetscObjectChangeTypeName((PetscObject)B,MATHYPRESSTRUCT);
    1119:   return(0);
    1120: }