Date: 2016-07-24T16:58:50+00:00

Actual source code: dmmbimpl.h
petsc-3.7.3 2016-07-24
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      1: #if !defined(_DMMBIMPL_H)
      2: #define _DMMBIMPL_H

      4: #include <petscdmmoab.h>    /*I      "petscdmmoab.h"    I*/
     5:  #include petsc/private/dmimpl.h

      7: /* This is an integer map, in addition it is also a container class
      8:    Design points:
      9:      - Low storage is the most important design point
     10:      - We want flexible insertion and deletion
     11:      - We can live with O(log) query, but we need O(1) iteration over strata
     12: */
     13: typedef struct {
     14:   moab::Interface    *mbiface;
     15:   moab::ParallelComm *pcomm;
     16:   moab::Range        *tag_range; /* entities to which this tag applies */
     17:   moab::Tag           tag;
     18:   PetscInt            tag_size;
     19:   PetscBool           new_tag;
     20:   PetscBool           is_global_vec;
     21:   PetscBool           is_native_vec;
     22:   Vec                 local;
     23: } Vec_MOAB;

     26: typedef struct {
     27:   PetscInt                dim;                            /* Current topological dimension handled by DMMoab */
     28:   PetscInt                n,nloc,nghost;                  /* Number of global, local only and shared vertices for current partition */
     29:   PetscInt                nele,neleloc,neleghost;         /* Number of global, local only and shared elements for current partition */
     30:   PetscInt                bs;                             /* Block size that controls the strided vs interlaced configuration in discrete systems -
     31:                                                              This affects the layout and hence the degree-of-freedom of the different fields (components) */
     32:   PetscInt                *gsindices;                     /* Global ID for all local+ghosted vertices */
     33:   PetscInt                *gidmap,*lidmap,*llmap,*lgmap;  /* Global ID indices, Local ID indices, field-based local map, field-based global map */
     34:   PetscInt                vstart,vend;                    /* Global start and end index for distributed Vec */

     36:   /* MOAB objects cached internally in DMMoab */
     37:   moab::Interface         *mbiface;                       /* MOAB Interface/Core reference */
     38:   moab::ParallelComm      *pcomm;                         /* MOAB ParallelComm reference */
     39:   moab::Tag               ltog_tag;                       /* MOAB supports "global id" tags */
     40:   moab::Tag               material_tag;                   /* MOAB supports "material_set" tags */
     41:   moab::Range             *vowned, *vghost, *vlocal;      /* Vertex entities: strictly owned, strictly ghosted, owned+ghosted */
     42:   moab::Range             *elocal, *eghost;               /* Topological dimensional entities: strictly owned, strictly ghosted */
     43:   moab::Range             *bndyvtx,*bndyfaces,*bndyelems; /* Boundary entities: skin vertices, skin faces and elements on the outer skin */
     44:   moab::EntityHandle      fileset;                        /* The Global set to which all local entities belong */

     46:   PetscInt               *dfill, *ofill;

     48:   /* store the mapping information */
     49:   ISLocalToGlobalMapping  ltog_map;
     50:   VecScatter              ltog_sendrecv;

     52:   /* store options to customize DMMoab */
     53:   PetscInt                rw_dbglevel;
     54:   PetscBool               partition_by_rank;
     55:   char                    extra_read_options[PETSC_MAX_PATH_LEN];
     56:   char                    extra_write_options[PETSC_MAX_PATH_LEN];
     57:   MoabReadMode            read_mode;
     58:   MoabWriteMode           write_mode;

     60:   PetscInt                numFields;
     61:   const char              **fieldNames;
     62:   PetscBool               icreatedinstance;               /* true if DM created moab instance internally, will destroy instance in DMDestroy */
     63: } DM_Moab;

     66: PETSC_EXTERN PetscErrorCode DMCreateGlobalVector_Moab(DM,Vec *);
     67: PETSC_EXTERN PetscErrorCode DMCreateLocalVector_Moab(DM,Vec *);
     68: PETSC_EXTERN PetscErrorCode DMCreateMatrix_Moab(DM dm,Mat *J);
     69: PETSC_EXTERN PetscErrorCode DMGlobalToLocalBegin_Moab(DM,Vec,InsertMode,Vec);
     70: PETSC_EXTERN PetscErrorCode DMGlobalToLocalEnd_Moab(DM,Vec,InsertMode,Vec);
     71: PETSC_EXTERN PetscErrorCode DMLocalToGlobalBegin_Moab(DM,Vec,InsertMode,Vec);
     72: PETSC_EXTERN PetscErrorCode DMLocalToGlobalEnd_Moab(DM,Vec,InsertMode,Vec);

     74: #endif /* _DMMBIMPL_H */