Uses of Class
htsjdk.variant.vcf.VCFContigHeaderLine

Packages that use VCFContigHeaderLine

Package	Description
htsjdk.variant.variantcontext
htsjdk.variant.vcf

Uses of VCFContigHeaderLine in htsjdk.variant.variantcontext

Method parameters in htsjdk.variant.variantcontext with type arguments of type VCFContigHeaderLine

Modifier and Type	Method and Description
boolean	VariantContextComparator.isCompatible(Collection<VCFContigHeaderLine> headerLines) Returns true if the given header lines are from a file sorted according to this VariantContextComparator.

Constructor parameters in htsjdk.variant.variantcontext with type arguments of type VCFContigHeaderLine

Constructor and Description
VariantContextComparator(Collection<VCFContigHeaderLine> headerLines) Creates a VariantContextComparator from the given VCF contig header lines.

Uses of VCFContigHeaderLine in htsjdk.variant.vcf

Methods in htsjdk.variant.vcf that return types with arguments of type VCFContigHeaderLine

Modifier and Type	Method and Description
List<VCFContigHeaderLine>	VCFHeader.getContigLines()
static List<VCFContigHeaderLine>	VCFUtils.makeContigHeaderLines(SAMSequenceDictionary refDict, File referenceFile) Create VCFHeaderLines for each refDict entry, and optionally the assembly if referenceFile != null