Uses of Class
htsjdk.samtools.sra.SRAAccession

Packages that use SRAAccession

Package	Description
htsjdk.samtools
htsjdk.samtools.sra

Uses of SRAAccession in htsjdk.samtools

Methods in htsjdk.samtools with parameters of type SRAAccession

Modifier and Type	Method and Description
static SamInputResource	SamInputResource.of(SRAAccession acc)

Constructors in htsjdk.samtools with parameters of type SRAAccession

Constructor and Description
SRAFileReader(SRAAccession acc)
SRAIterator(SRAAccession accession, ngs.ReadCollection run, SAMFileHeader header, ReferenceCache cachedReferences, SRAIterator.RecordRangeInfo recordRangeInfo, List<Chunk> chunks)

Uses of SRAAccession in htsjdk.samtools.sra

Constructors in htsjdk.samtools.sra with parameters of type SRAAccession

Constructor and Description
SRAAlignmentIterator(SRAAccession accession, ngs.ReadCollection run, SAMFileHeader header, ReferenceCache cachedReferences, SRAIterator.RecordRangeInfo recordRangeInfo, Chunk chunk)
SRAIndexedSequenceFile(SRAAccession acc)
SRALazyRecord(SAMFileHeader header, SRAAccession accession, ngs.ReadCollection run, ngs.AlignmentIterator alignmentIterator, String readId, String alignmentId)
SRALazyRecord(SAMFileHeader header, SRAAccession accession, ngs.ReadCollection run, ngs.ReadIterator unalignmentIterator, String readId, int unalignedReadFragmentIndex)
SRALazyRecord(SAMFileHeader header, SRAAccession accession, String readId, int unalignedReadFragmentIndex)
SRALazyRecord(SAMFileHeader header, SRAAccession accession, String readId, String alignmentId)
SRAUnalignmentIterator(SRAAccession accession, ngs.ReadCollection run, SAMFileHeader header, SRAIterator.RecordRangeInfo recordRangeInfo, Chunk chunk)