Uses of Class
htsjdk.samtools.reference.FastaSequenceIndex

Packages that use FastaSequenceIndex

Package	Description
htsjdk.samtools.reference

Uses of FastaSequenceIndex in htsjdk.samtools.reference

Methods in htsjdk.samtools.reference with parameters of type FastaSequenceIndex

Modifier and Type	Method and Description
protected static void	IndexedFastaSequenceFile.sanityCheckDictionaryAgainstIndex(String fastaFile, SAMSequenceDictionary sequenceDictionary, FastaSequenceIndex index) Do some basic checking to make sure the dictionary and the index match.

Constructors in htsjdk.samtools.reference with parameters of type FastaSequenceIndex

Constructor and Description
IndexedFastaSequenceFile(File file, FastaSequenceIndex index) Open the given indexed fasta sequence file.
IndexedFastaSequenceFile(Path path, FastaSequenceIndex index) Open the given indexed fasta sequence file.