elastixlib.h

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/*=========================================================================
 *
 *  Copyright UMC Utrecht and contributors
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *        http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __elastixlib_h
#define __elastixlib_h
 
/*
 *  Includes
 */
#include <itkDataObject.h>
#include "itkParameterFileParser.h"
#include "elxMacro.h"
#include "elxElastixMain.h"
 
 
/********************************************************************************
 *                          *
 *      Class definition    *
 *                          *
 ********************************************************************************/
 
namespace elastix
{
 
class ELASTIXLIB_API ELASTIX
{
public:
 
  //typedefs for images
  typedef itk::DataObject Image;
  typedef Image::Pointer  ImagePointer;
 
  //typedefs for parameter map
  typedef itk::ParameterFileParser::ParameterValuesType             ParameterValuesType;
  typedef itk::ParameterFileParser::ParameterMapType                ParameterMapType;
  typedef std::vector< itk::ParameterFileParser::ParameterMapType > ParameterMapListType;
 
  //typedefs for ObjectPointer
  typedef elastix::ElastixMain::ObjectPointer              ObjectPointer;
 
  ELASTIX();
  virtual ~ELASTIX();
 
  int RegisterImages( ImagePointer fixedImage,
    ImagePointer movingImage,
    ParameterMapType & parameterMap,
    std::string outputPath,
    bool performLogging,
    bool performCout,
    ImagePointer fixedMask = 0,
    ImagePointer movingMask = 0 );
 
  int RegisterImages( ImagePointer fixedImage,
    ImagePointer movingImage,
    std::vector< ParameterMapType > & parameterMaps,
    std::string outputPath,
    bool performLogging,
    bool performCout,
    ImagePointer fixedMask = 0,
    ImagePointer movingMask = 0,
    ObjectPointer transform = 0);
 
  ImagePointer GetResultImage( void );
 
  ParameterMapType GetTransformParameterMap( void );
 
  ParameterMapListType GetTransformParameterMapList( void );
 
  std::string ConvertSecondsToDHMS( const double totalSeconds, const unsigned int precision = 0 );
 
  std::string GetCurrentDateAndTime( void );
 
private:
 
  /* the result images */
  ImagePointer m_ResultImage;
 
  /* Final transformation*/
  ParameterMapListType m_TransformParametersList;
 
};
 
// end class ELASTIX
 
} // end namespace elastix
 
#endif