#include <elxAdvancedBSplineTransform.h>

Detailed Description

template<class TElastix>
class elastix::AdvancedBSplineTransform< TElastix >

A transform based on the itkAdvancedBSplineTransform.

This transform is a B-spline transformation, commonly used for nonrigid registration.

The parameters used in this class are:

Parameters:: Transform: Select this transform as follows:
(Transform "BSplineTransform")

Parameters:: BSplineTransformSplineOrder: choose a B-spline order 1,2, or 3.
example: (BSplineTransformSplineOrder 3)
Default value: 3 (cubic B-splines).

Parameters:: FinalGridSpacingInVoxels: the grid spacing of the B-spline transform for each dimension.
example: (FinalGridSpacingInVoxels 8.0 8.0 8.0)
If only one argument is given, that factor is used for each dimension. The spacing is not in millimeters, but in "voxel size units". The default is 16.0 in every dimension.

Parameters:: FinalGridSpacingInPhysicalUnits: the grid spacing of the B-spline transform for each dimension.
example: (FinalGridSpacingInPhysicalUnits 8.0 8.0 8.0)
If only one argument is given, that factor is used for each dimension. The spacing is specified in millimeters. If not specified, the FinalGridSpacingInVoxels is used, or the FinalGridSpacing, to compute a FinalGridSpacingInPhysicalUnits. If those are not specified, the default value for FinalGridSpacingInVoxels is used to compute a FinalGridSpacingInPhysicalUnits. If an affine transformation is provided as initial transformation, the control grid will be scaled to cover the fixed image domain in the space defined by the initial transformation.

Parameters:: GridSpacingSchedule: the grid spacing downsampling factors for the B-spline transform for each dimension and each resolution.
example: (GridSpacingSchedule 4.0 4.0 2.0 2.0 1.0 1.0)
Which is an example for a 2D image, using 3 resolutions.
For convenience, you may also specify only one value for each resolution:
example: (GridSpacingSchedule 4.0 2.0 1.0 )
which is equivalent to the example above.

Parameters:: PassiveEdgeWidth: the width of a band of control points at the border of the B-spline coefficient image that should remain passive during optimisation.
Can be specified for each resolution.
example: (PassiveEdgeWidth 0 1 2)
The default is zero for all resolutions. A value of 4 will avoid all deformations at the edge of the image. Make sure that 2*PassiveEdgeWidth < ControlPointGridSize in each dimension.

Parameters:: UseCyclicTransform: use the cyclic version of the B-spline transform which ensures that the B-spline polynomials wrap around in the slowest varying dimension. This is useful for dynamic imaging data in which the motion is assumed to be cyclic, for example in ECG-gated or respiratory gated CTA. For more information see the paper: Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press.

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters:: GridSize: stores the size of the B-spline grid.
example: (GridSize 16 16 16)

Transform Parameters:: GridIndex: stores the index of the B-spline grid.
example: (GridIndex 0 0 0)

Transform Parameters:: GridSpacing: stores the spacing of the B-spline grid.
example: (GridSpacing 16.0 16.0 16.0)

Transform Parameters:: GridOrigin: stores the origin of the B-spline grid.
example: (GridOrigin 0.0 0.0 0.0)

Transform Parameters:: GridDirection: stores the direction cosines of the B-spline grid.
example: (GridDirection 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.1)

Transform Parameters:: BSplineTransformSplineOrder: stores the B-spline order 1,2, or 3.
example: (BSplineTransformSplineOrder 3) Default value: 3 (cubic B-splines).

Transform Parameters:: UseCyclicTransform: use the cyclic version of the B-spline transform which ensures that the B-spline polynomials wrap around in the slowest varying dimension. This is useful for dynamic imaging data in which the motion is assumed to be cyclic, for example in ECG-gated or respiratory gated CTA. For more information see the paper: Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press.

Todo:: It is unsure what happens when one of the image dimensions has length 1.

Definition at line 109 of file elxAdvancedBSplineTransform.h.

Inheritance diagram for elastix::AdvancedBSplineTransform< TElastix >:

Public Types
typedef BSplineTransformBaseType::Pointer	BSplineTransformBasePointer

typedef itk::AdvancedBSplineDeformableTransformBase< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension) >	BSplineTransformBaseType

typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), 3 >	BSplineTransformCubicType

typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), 1 >	BSplineTransformLinearType

typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), 2 >	BSplineTransformQuadraticType

typedef Superclass2::CombinationTransformType	CombinationTransformType

typedef Superclass2::ConfigurationPointer	ConfigurationPointer

typedef Superclass2::ConfigurationType	ConfigurationType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef BSplineTransformBaseType::ContinuousIndexType	ContinuousIndexType

typedef Superclass2::CoordRepType	CoordRepType

typedef itk::CyclicBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), 3 >	CyclicBSplineTransformCubicType

typedef itk::CyclicBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), 1 >	CyclicBSplineTransformLinearType

typedef itk::CyclicBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), 2 >	CyclicBSplineTransformQuadraticType

typedef itk::CyclicGridScheduleComputer< CoordRepType, SpaceDimension >	CyclicGridScheduleComputerType

typedef BSplineTransformBaseType::DirectionType	DirectionType

typedef Superclass2::ElastixPointer	ElastixPointer

typedef Superclass2::ElastixType	ElastixType

typedef Superclass2::FixedImageType	FixedImageType

typedef GridScheduleComputerType::Pointer	GridScheduleComputerPointer

typedef itk::GridScheduleComputer< CoordRepType, SpaceDimension >	GridScheduleComputerType

typedef GridScheduleComputerType ::VectorGridSpacingFactorType	GridScheduleType

typedef GridUpsamplerType::Pointer	GridUpsamplerPointer

typedef itk::UpsampleBSplineParametersFilter< ParametersType, ImageType >	GridUpsamplerType

typedef BSplineTransformBaseType::ImagePointer	ImagePointer

typedef BSplineTransformBaseType::ImageType	ImageType

typedef BSplineTransformBaseType::IndexType	IndexType

typedef Superclass1::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass1::InputPointType	InputPointType

typedef Superclass1::InputVectorType	InputVectorType

typedef Superclass1::InputVnlVectorType	InputVnlVectorType

typedef Superclass2::ITKBaseType	ITKBaseType

typedef Superclass1::JacobianType	JacobianType

typedef Superclass2::MovingImageType	MovingImageType

typedef Superclass1::NumberOfParametersType	NumberOfParametersType

typedef BSplineTransformBaseType::OriginType	OriginType

typedef Superclass1::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass1::OutputPointType	OutputPointType

typedef Superclass1::OutputVectorType	OutputVectorType

typedef Superclass1::OutputVnlVectorType	OutputVnlVectorType

typedef BSplineTransformBaseType::ParameterIndexArrayType	ParameterIndexArrayType

typedef Superclass2::ParameterMapType	ParameterMapType

typedef Superclass1::ParametersType	ParametersType

typedef BSplineTransformBaseType::PixelType	PixelType

typedef itk::SmartPointer< Self >	Pointer

typedef BSplineTransformBaseType::RegionType	RegionType

typedef Superclass2::RegistrationPointer	RegistrationPointer

typedef Superclass2::RegistrationType	RegistrationType

typedef Superclass1::ScalarType	ScalarType

typedef AdvancedBSplineTransform	Self

typedef BSplineTransformBaseType::SizeType	SizeType

typedef BSplineTransformBaseType::SpacingType	SpacingType

typedef itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >	Superclass1

typedef elx::TransformBase< TElastix >	Superclass2

Public Types inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
typedef SmartPointer< const Self >	ConstPointer

typedef CurrentTransformType::ConstPointer	CurrentTransformConstPointer

typedef CurrentTransformType::InverseTransformBasePointer	CurrentTransformInverseTransformBasePointer

typedef CurrentTransformType::InverseTransformBaseType	CurrentTransformInverseTransformBaseType

typedef CurrentTransformType::Pointer	CurrentTransformPointer

typedef Superclass	CurrentTransformType

typedef Superclass::DerivativeType	DerivativeType

typedef void(Self::*	EvaluateJacobianWithImageGradientProductFunctionPointer) (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

typedef Superclass::FixedParametersType	FixedParametersType

typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer) (const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer2) (const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer) (const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer2) (const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetSparseJacobianFunctionPointer) (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetSpatialHessianFunctionPointer) (const InputPointType &, SpatialHessianType &) const

typedef void(Self::*	GetSpatialJacobianFunctionPointer) (const InputPointType &, SpatialJacobianType &) const

typedef InitialTransformType::ConstPointer	InitialTransformConstPointer

typedef InitialTransformType::InverseTransformBasePointer	InitialTransformInverseTransformBasePointer

typedef InitialTransformType::InverseTransformBaseType	InitialTransformInverseTransformBaseType

typedef InitialTransformType::Pointer	InitialTransformPointer

typedef Superclass	InitialTransformType

typedef Superclass::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef Superclass::InternalMatrixType	InternalMatrixType

typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer

typedef Superclass::InverseTransformBaseType	InverseTransformBaseType

typedef Superclass::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType

typedef Superclass::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType

typedef Superclass::JacobianType	JacobianType

typedef Superclass::MovingImageGradientType	MovingImageGradientType

typedef Superclass::MovingImageGradientValueType	MovingImageGradientValueType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef Superclass::ScalarType	ScalarType

typedef AdvancedCombinationTransform	Self

typedef Superclass::SpatialHessianType	SpatialHessianType

typedef Superclass::SpatialJacobianType	SpatialJacobianType

typedef AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >	Superclass

typedef Superclass::TransformCategoryType	TransformCategoryType

typedef OutputPointType(Self::*	TransformPointFunctionPointer) (const InputPointType &) const

typedef Superclass::TransformType	TransformType

typedef TransformType::ConstPointer	TransformTypeConstPointer

typedef TransformType::Pointer	TransformTypePointer

Public Types inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::FixedParametersType	FixedParametersType

typedef Superclass ::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef SpatialJacobianType::InternalMatrixType	InternalMatrixType

typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer

typedef Superclass::InverseTransformBaseType	InverseTransformBaseType

typedef std::vector< SpatialHessianType >	JacobianOfSpatialHessianType

typedef std::vector< SpatialJacobianType >	JacobianOfSpatialJacobianType

typedef Superclass::JacobianType	JacobianType

typedef OutputCovariantVectorType	MovingImageGradientType

typedef MovingImageGradientType::ValueType	MovingImageGradientValueType

typedef std::vector< unsigned long >	NonZeroJacobianIndicesType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass ::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef Superclass::ScalarType	ScalarType

typedef AdvancedTransform	Self

typedef FixedArray< Matrix< ScalarType, InputSpaceDimension, InputSpaceDimension >, OutputSpaceDimension >	SpatialHessianType

typedef Matrix< ScalarType, OutputSpaceDimension, InputSpaceDimension >	SpatialJacobianType

typedef Transform< elx::TransformBase< TElastix >::CoordRepType, NInputDimensions, NOutputDimensions >	Superclass

typedef Transform< elx::TransformBase< TElastix >::CoordRepType, NInputDimensions, NOutputDimensions >	TransformType

typedef TransformType::ConstPointer	TransformTypeConstPointer

typedef TransformType::Pointer	TransformTypePointer

Public Types inherited from elastix::TransformBase< TElastix >
typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension) >	CombinationTransformType

typedef ConfigurationType ::CommandLineArgumentMapType	CommandLineArgumentMapType

typedef ConfigurationType ::CommandLineEntryType	CommandLineEntryType

typedef ComponentDatabase	ComponentDatabaseType

typedef ComponentDatabaseType::ComponentDescriptionType	ComponentDescriptionType

typedef Superclass::ConfigurationPointer	ConfigurationPointer

typedef Superclass::ConfigurationType	ConfigurationType

typedef ElastixType::CoordRepType	CoordRepType

typedef itk::Image< VectorPixelType, FixedImageDimension >	DeformationFieldImageType

typedef Superclass::ElastixPointer	ElastixPointer

typedef Superclass::ElastixType	ElastixType

typedef ElastixType::FixedImageType	FixedImageType

typedef CombinationTransformType::InitialTransformType	InitialTransformType

typedef ITKBaseType::InputPointType	InputPointType

typedef itk::AdvancedTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension), itkGetStaticConstMacro(MovingImageDimension) >	ITKBaseType

typedef RegistrationType::ITKBaseType	ITKRegistrationType

typedef ElastixType::MovingImageType	MovingImageType

typedef itk::Object	ObjectType

typedef ITKRegistrationType::OptimizerType	OptimizerType

typedef ITKBaseType::OutputPointType	OutputPointType

typedef ElastixType::ParameterMapType	ParameterMapType

typedef ITKBaseType::ParametersType	ParametersType

typedef elx::ProgressCommand	ProgressCommandType

typedef ComponentDatabase::PtrToCreator	PtrToCreator

typedef Superclass::RegistrationPointer	RegistrationPointer

typedef Superclass::RegistrationType	RegistrationType

typedef OptimizerType::ScalesType	ScalesType

typedef TransformBase	Self

typedef BaseComponentSE< TElastix >	Superclass

typedef ParametersType::ValueType	ValueType

typedef itk::Vector< float, FixedImageDimension >	VectorPixelType

Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer	ConfigurationPointer

typedef ElastixType::ConfigurationType	ConfigurationType

typedef itk::WeakPointer< ElastixType >	ElastixPointer

typedef TElastix	ElastixType

typedef RegistrationType *	RegistrationPointer

typedef ElastixType::RegistrationBaseType	RegistrationType

typedef BaseComponentSE	Self

typedef BaseComponent	Superclass

Public Member Functions
virtual int	BeforeAll (void)

virtual void	BeforeEachResolution (void)

virtual void	BeforeRegistration (void)

virtual void	CreateTransformParametersMap (const ParametersType &param, ParameterMapType *paramsMap) const

	elxClassNameMacro ("BSplineTransform")

virtual const char *	GetClassName () const

virtual void	IncreaseScale (void)

virtual void	InitializeTransform (void)

	itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)

virtual void	ReadFromFile (void)

virtual void	SetOptimizerScales (const unsigned int edgeWidth)

virtual void	WriteToFile (const ParametersType &param) const

Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
virtual void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual const char *	GetClassName () const

virtual CurrentTransformType *	GetCurrentTransform ()

virtual const CurrentTransformType *	GetCurrentTransform ()

virtual const FixedParametersType &	GetFixedParameters (void) const

virtual bool	GetHasNonZeroSpatialHessian (void) const

virtual InitialTransformType *	GetInitialTransform ()

virtual const InitialTransformType *	GetInitialTransform ()

virtual bool	GetInverse (Self *inverse) const

virtual void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual const TransformTypePointer	GetNthTransform (SizeValueType n) const

virtual NumberOfParametersType	GetNumberOfNonZeroJacobianIndices (void) const

virtual NumberOfParametersType	GetNumberOfParameters (void) const

virtual SizeValueType	GetNumberOfTransforms (void) const

virtual const ParametersType &	GetParameters (void) const

virtual void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const

virtual void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const

virtual TransformCategoryType	GetTransformCategory () const

virtual bool	GetUseAddition () const

virtual bool	GetUseComposition () const

virtual bool	HasNonZeroJacobianOfSpatialHessian (void) const

virtual bool	IsLinear (void) const

	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)

virtual void	SetCurrentTransform (CurrentTransformType *_arg)

virtual void	SetFixedParameters (const FixedParametersType &fixedParam)

virtual void	SetInitialTransform (InitialTransformType *_arg)

virtual void	SetParameters (const ParametersType &param)

virtual void	SetParametersByValue (const ParametersType &param)

virtual void	SetUseAddition (bool _arg)

virtual void	SetUseComposition (bool _arg)

virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const

virtual OutputPointType	TransformPoint (const InputPointType &point) const

virtual OutputVectorType	TransformVector (const InputVectorType &) const

virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const

Public Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
virtual void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const

virtual void	ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const

virtual void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const=0

	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)

	itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)

Public Member Functions inherited from elastix::TransformBase< TElastix >
virtual void	AfterRegistrationBase (void)

virtual int	BeforeAllBase (void)

virtual int	BeforeAllTransformix (void)

virtual void	BeforeRegistrationBase (void)

virtual void	ComputeDeterminantOfSpatialJacobian (void) const

virtual void	ComputeSpatialJacobian (void) const

DeformationFieldImageType::Pointer	GenerateDeformationFieldImage (void) const

virtual CombinationTransformType *	GetAsCombinationTransform (void)

virtual const CombinationTransformType *	GetAsCombinationTransform (void) const

virtual ITKBaseType *	GetAsITKBaseType (void)

virtual const ITKBaseType *	GetAsITKBaseType (void) const

virtual const InitialTransformType *	GetInitialTransform (void) const

virtual const char *	GetTransformParametersFileName () const

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	ReadInitialTransformFromFile (const char *transformParameterFileName)

virtual void	ReadInitialTransformFromVector (const vcl_size_t index)

virtual void	SetFinalParameters (void)

virtual void	SetInitialTransform (InitialTransformType *_arg)

virtual void	SetReadWriteTransformParameters (const bool _arg)

virtual void	SetTransformParametersFileName (const char *filename)

virtual void	TransformPoints (void) const

virtual void	TransformPointsAllPoints (void) const

virtual void	TransformPointsSomePoints (const std::string filename) const

virtual void	TransformPointsSomePointsVTK (const std::string filename) const

void	WriteDeformationFieldImage (typename DeformationFieldImageType::Pointer) const

virtual void	WriteToFile (void) const

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationType *	GetConfiguration (void) const

virtual ElastixType *	GetElastix (void) const

virtual RegistrationPointer	GetRegistration (void) const

virtual void	SetConfiguration (ConfigurationType *_arg)

virtual void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)

virtual void	AfterEachIterationBase (void)

virtual void	AfterEachResolution (void)

virtual void	AfterEachResolutionBase (void)

virtual void	AfterRegistration (void)

virtual void	BeforeEachResolutionBase (void)

std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision) const

virtual const char *	elxGetClassName (void) const

virtual const char *	GetComponentLabel (void) const

	itkTypeMacroNoParent (BaseComponent)

virtual void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
static Pointer	New ()

Protected Member Functions
	AdvancedBSplineTransform ()

virtual void	PreComputeGridInformation (void)

virtual	~AdvancedBSplineTransform ()

Protected Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
	AdvancedCombinationTransform ()

void	EvaluateJacobianWithImageGradientProductNoCurrentTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductNoInitialTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseAddition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseComposition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const

void	GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const

virtual void	NoCurrentTransformSet (void) const throw ( ExceptionObject )

OutputPointType	TransformPointNoCurrentTransform (const InputPointType &point) const

OutputPointType	TransformPointNoInitialTransform (const InputPointType &point) const

OutputPointType	TransformPointUseAddition (const InputPointType &point) const

OutputPointType	TransformPointUseComposition (const InputPointType &point) const

virtual void	UpdateCombinationMethod (void)

virtual	~AdvancedCombinationTransform ()

Protected Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
	AdvancedTransform ()

	AdvancedTransform (NumberOfParametersType numberOfParameters)

virtual	~AdvancedTransform ()

Protected Member Functions inherited from elastix::TransformBase< TElastix >
void	AutomaticScalesEstimation (ScalesType &scales) const

void	AutomaticScalesEstimationStackTransform (const unsigned int &numSubTransforms, ScalesType &scales) const

	TransformBase ()

virtual	~TransformBase ()

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()

virtual	~BaseComponentSE ()

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()

virtual	~BaseComponent ()

Private Member Functions
	AdvancedBSplineTransform (const Self &)

unsigned int	InitializeBSplineTransform ()

void	operator= (const Self &)

Private Attributes
BSplineTransformBasePointer	m_BSplineTransform

bool	m_Cyclic

GridScheduleComputerPointer	m_GridScheduleComputer

GridUpsamplerPointer	m_GridUpsampler

unsigned int	m_SplineOrder

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
CurrentTransformPointer	m_CurrentTransform

InitialTransformPointer	m_InitialTransform

EvaluateJacobianWithImageGradientProductFunctionPointer	m_SelectedEvaluateJacobianWithImageGradientProductFunction

GetJacobianOfSpatialHessianFunctionPointer	m_SelectedGetJacobianOfSpatialHessianFunction

GetJacobianOfSpatialHessianFunctionPointer2	m_SelectedGetJacobianOfSpatialHessianFunction2

GetJacobianOfSpatialJacobianFunctionPointer	m_SelectedGetJacobianOfSpatialJacobianFunction

GetJacobianOfSpatialJacobianFunctionPointer2	m_SelectedGetJacobianOfSpatialJacobianFunction2

GetSparseJacobianFunctionPointer	m_SelectedGetSparseJacobianFunction

GetSpatialHessianFunctionPointer	m_SelectedGetSpatialHessianFunction

GetSpatialJacobianFunctionPointer	m_SelectedGetSpatialJacobianFunction

TransformPointFunctionPointer	m_SelectedTransformPointFunction

bool	m_UseAddition

bool	m_UseComposition

Protected Attributes inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
bool	m_HasNonZeroJacobianOfSpatialHessian

bool	m_HasNonZeroSpatialHessian

Protected Attributes inherited from elastix::TransformBase< TElastix >
ParametersType	m_FinalParameters

std::string	m_TransformParametersFileName

ParametersType *	m_TransformParametersPointer

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration

ElastixPointer	m_Elastix

RegistrationPointer	m_Registration

Member Typedef Documentation

◆ BSplineTransformBasePointer

template<class TElastix >

typedef BSplineTransformBaseType::Pointer elastix::AdvancedBSplineTransform< TElastix >::BSplineTransformBasePointer

Definition at line 149 of file elxAdvancedBSplineTransform.h.

◆ BSplineTransformBaseType

template<class TElastix >

typedef itk::AdvancedBSplineDeformableTransformBase< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ) > elastix::AdvancedBSplineTransform< TElastix >::BSplineTransformBaseType

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform.

Definition at line 148 of file elxAdvancedBSplineTransform.h.

◆ BSplineTransformCubicType

template<class TElastix >

typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), 3 > elastix::AdvancedBSplineTransform< TElastix >::BSplineTransformCubicType

Definition at line 163 of file elxAdvancedBSplineTransform.h.

◆ BSplineTransformLinearType

template<class TElastix >

typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), 1 > elastix::AdvancedBSplineTransform< TElastix >::BSplineTransformLinearType

Typedef for supported BSplineTransform types.

Definition at line 155 of file elxAdvancedBSplineTransform.h.

◆ BSplineTransformQuadraticType

template<class TElastix >

typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), 2 > elastix::AdvancedBSplineTransform< TElastix >::BSplineTransformQuadraticType

Definition at line 159 of file elxAdvancedBSplineTransform.h.

◆ CombinationTransformType

template<class TElastix >

typedef Superclass2::CombinationTransformType elastix::AdvancedBSplineTransform< TElastix >::CombinationTransformType

Definition at line 217 of file elxAdvancedBSplineTransform.h.

◆ ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::AdvancedBSplineTransform< TElastix >::ConfigurationPointer

Definition at line 210 of file elxAdvancedBSplineTransform.h.

◆ ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::AdvancedBSplineTransform< TElastix >::ConfigurationType

Definition at line 209 of file elxAdvancedBSplineTransform.h.

◆ ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::AdvancedBSplineTransform< TElastix >::ConstPointer

Definition at line 126 of file elxAdvancedBSplineTransform.h.

◆ ContinuousIndexType

template<class TElastix >

typedef BSplineTransformBaseType::ContinuousIndexType elastix::AdvancedBSplineTransform< TElastix >::ContinuousIndexType

Definition at line 202 of file elxAdvancedBSplineTransform.h.

◆ CoordRepType

template<class TElastix >

typedef Superclass2::CoordRepType elastix::AdvancedBSplineTransform< TElastix >::CoordRepType

Definition at line 213 of file elxAdvancedBSplineTransform.h.

◆ CyclicBSplineTransformCubicType

template<class TElastix >

typedef itk::CyclicBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), 3 > elastix::AdvancedBSplineTransform< TElastix >::CyclicBSplineTransformCubicType

Definition at line 175 of file elxAdvancedBSplineTransform.h.

◆ CyclicBSplineTransformLinearType

template<class TElastix >

typedef itk::CyclicBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), 1 > elastix::AdvancedBSplineTransform< TElastix >::CyclicBSplineTransformLinearType

Definition at line 167 of file elxAdvancedBSplineTransform.h.

◆ CyclicBSplineTransformQuadraticType

template<class TElastix >

typedef itk::CyclicBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), 2 > elastix::AdvancedBSplineTransform< TElastix >::CyclicBSplineTransformQuadraticType

Definition at line 171 of file elxAdvancedBSplineTransform.h.

◆ CyclicGridScheduleComputerType

template<class TElastix >

typedef itk::CyclicGridScheduleComputer< CoordRepType, SpaceDimension > elastix::AdvancedBSplineTransform< TElastix >::CyclicGridScheduleComputerType

Definition at line 223 of file elxAdvancedBSplineTransform.h.

◆ DirectionType

template<class TElastix >

typedef BSplineTransformBaseType::DirectionType elastix::AdvancedBSplineTransform< TElastix >::DirectionType

Definition at line 200 of file elxAdvancedBSplineTransform.h.

◆ ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::AdvancedBSplineTransform< TElastix >::ElastixPointer

Definition at line 208 of file elxAdvancedBSplineTransform.h.

◆ ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::AdvancedBSplineTransform< TElastix >::ElastixType

Typedef's from TransformBase.

Definition at line 207 of file elxAdvancedBSplineTransform.h.

◆ FixedImageType

template<class TElastix >

typedef Superclass2::FixedImageType elastix::AdvancedBSplineTransform< TElastix >::FixedImageType

Definition at line 214 of file elxAdvancedBSplineTransform.h.

◆ GridScheduleComputerPointer

template<class TElastix >

typedef GridScheduleComputerType::Pointer elastix::AdvancedBSplineTransform< TElastix >::GridScheduleComputerPointer

Definition at line 224 of file elxAdvancedBSplineTransform.h.

◆ GridScheduleComputerType

template<class TElastix >

typedef itk::GridScheduleComputer< CoordRepType, SpaceDimension > elastix::AdvancedBSplineTransform< TElastix >::GridScheduleComputerType

Typedef's for the GridScheduleComputer and the UpsampleBSplineParametersFilter.

Definition at line 221 of file elxAdvancedBSplineTransform.h.

◆ GridScheduleType

template<class TElastix >

typedef GridScheduleComputerType ::VectorGridSpacingFactorType elastix::AdvancedBSplineTransform< TElastix >::GridScheduleType

Definition at line 226 of file elxAdvancedBSplineTransform.h.

◆ GridUpsamplerPointer

template<class TElastix >

typedef GridUpsamplerType::Pointer elastix::AdvancedBSplineTransform< TElastix >::GridUpsamplerPointer

Definition at line 229 of file elxAdvancedBSplineTransform.h.

◆ GridUpsamplerType

template<class TElastix >

typedef itk::UpsampleBSplineParametersFilter< ParametersType, ImageType > elastix::AdvancedBSplineTransform< TElastix >::GridUpsamplerType

Definition at line 228 of file elxAdvancedBSplineTransform.h.

◆ ImagePointer

template<class TElastix >

typedef BSplineTransformBaseType::ImagePointer elastix::AdvancedBSplineTransform< TElastix >::ImagePointer

Definition at line 194 of file elxAdvancedBSplineTransform.h.

◆ ImageType

template<class TElastix >

typedef BSplineTransformBaseType::ImageType elastix::AdvancedBSplineTransform< TElastix >::ImageType

Definition at line 193 of file elxAdvancedBSplineTransform.h.

◆ IndexType

template<class TElastix >

typedef BSplineTransformBaseType::IndexType elastix::AdvancedBSplineTransform< TElastix >::IndexType

Definition at line 196 of file elxAdvancedBSplineTransform.h.

◆ InputCovariantVectorType

template<class TElastix >

typedef Superclass1::InputCovariantVectorType elastix::AdvancedBSplineTransform< TElastix >::InputCovariantVectorType

Definition at line 184 of file elxAdvancedBSplineTransform.h.

◆ InputPointType

template<class TElastix >

typedef Superclass1::InputPointType elastix::AdvancedBSplineTransform< TElastix >::InputPointType

Definition at line 188 of file elxAdvancedBSplineTransform.h.

◆ InputVectorType

template<class TElastix >

typedef Superclass1::InputVectorType elastix::AdvancedBSplineTransform< TElastix >::InputVectorType

Definition at line 182 of file elxAdvancedBSplineTransform.h.

◆ InputVnlVectorType

template<class TElastix >

typedef Superclass1::InputVnlVectorType elastix::AdvancedBSplineTransform< TElastix >::InputVnlVectorType

Definition at line 186 of file elxAdvancedBSplineTransform.h.

◆ ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::AdvancedBSplineTransform< TElastix >::ITKBaseType

Definition at line 216 of file elxAdvancedBSplineTransform.h.

◆ JacobianType

template<class TElastix >

typedef Superclass1::JacobianType elastix::AdvancedBSplineTransform< TElastix >::JacobianType

Definition at line 181 of file elxAdvancedBSplineTransform.h.

◆ MovingImageType

template<class TElastix >

typedef Superclass2::MovingImageType elastix::AdvancedBSplineTransform< TElastix >::MovingImageType

Definition at line 215 of file elxAdvancedBSplineTransform.h.

◆ NumberOfParametersType

template<class TElastix >

typedef Superclass1::NumberOfParametersType elastix::AdvancedBSplineTransform< TElastix >::NumberOfParametersType

Definition at line 180 of file elxAdvancedBSplineTransform.h.

◆ OriginType

template<class TElastix >

typedef BSplineTransformBaseType::OriginType elastix::AdvancedBSplineTransform< TElastix >::OriginType

Definition at line 199 of file elxAdvancedBSplineTransform.h.

◆ OutputCovariantVectorType

template<class TElastix >

typedef Superclass1::OutputCovariantVectorType elastix::AdvancedBSplineTransform< TElastix >::OutputCovariantVectorType

Definition at line 185 of file elxAdvancedBSplineTransform.h.

◆ OutputPointType

template<class TElastix >

typedef Superclass1::OutputPointType elastix::AdvancedBSplineTransform< TElastix >::OutputPointType

Definition at line 189 of file elxAdvancedBSplineTransform.h.

◆ OutputVectorType

template<class TElastix >

typedef Superclass1::OutputVectorType elastix::AdvancedBSplineTransform< TElastix >::OutputVectorType

Definition at line 183 of file elxAdvancedBSplineTransform.h.

◆ OutputVnlVectorType

template<class TElastix >

typedef Superclass1::OutputVnlVectorType elastix::AdvancedBSplineTransform< TElastix >::OutputVnlVectorType

Definition at line 187 of file elxAdvancedBSplineTransform.h.

◆ ParameterIndexArrayType

template<class TElastix >

typedef BSplineTransformBaseType::ParameterIndexArrayType elastix::AdvancedBSplineTransform< TElastix >::ParameterIndexArrayType

Definition at line 204 of file elxAdvancedBSplineTransform.h.

◆ ParameterMapType

template<class TElastix >

typedef Superclass2::ParameterMapType elastix::AdvancedBSplineTransform< TElastix >::ParameterMapType

Typedef that is used in the elastix dll version.

Definition at line 232 of file elxAdvancedBSplineTransform.h.

◆ ParametersType

template<class TElastix >

typedef Superclass1::ParametersType elastix::AdvancedBSplineTransform< TElastix >::ParametersType

Definition at line 179 of file elxAdvancedBSplineTransform.h.

◆ PixelType

template<class TElastix >

typedef BSplineTransformBaseType::PixelType elastix::AdvancedBSplineTransform< TElastix >::PixelType

Typedef's specific for the BSplineTransform.

Definition at line 192 of file elxAdvancedBSplineTransform.h.

◆ Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::AdvancedBSplineTransform< TElastix >::Pointer

Definition at line 125 of file elxAdvancedBSplineTransform.h.

◆ RegionType

template<class TElastix >

typedef BSplineTransformBaseType::RegionType elastix::AdvancedBSplineTransform< TElastix >::RegionType

Definition at line 195 of file elxAdvancedBSplineTransform.h.

◆ RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::AdvancedBSplineTransform< TElastix >::RegistrationPointer

Definition at line 212 of file elxAdvancedBSplineTransform.h.

◆ RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::AdvancedBSplineTransform< TElastix >::RegistrationType

Definition at line 211 of file elxAdvancedBSplineTransform.h.

◆ ScalarType

template<class TElastix >

typedef Superclass1::ScalarType elastix::AdvancedBSplineTransform< TElastix >::ScalarType

Typedefs inherited from the superclass.

Definition at line 178 of file elxAdvancedBSplineTransform.h.

◆ Self

template<class TElastix >

typedef AdvancedBSplineTransform elastix::AdvancedBSplineTransform< TElastix >::Self

Standard ITK-stuff.

Definition at line 120 of file elxAdvancedBSplineTransform.h.

◆ SizeType

template<class TElastix >

typedef BSplineTransformBaseType::SizeType elastix::AdvancedBSplineTransform< TElastix >::SizeType

Definition at line 197 of file elxAdvancedBSplineTransform.h.

◆ SpacingType

template<class TElastix >

typedef BSplineTransformBaseType::SpacingType elastix::AdvancedBSplineTransform< TElastix >::SpacingType

Definition at line 198 of file elxAdvancedBSplineTransform.h.

◆ Superclass1

template<class TElastix >

typedef itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::AdvancedBSplineTransform< TElastix >::Superclass1

Definition at line 123 of file elxAdvancedBSplineTransform.h.

◆ Superclass2

template<class TElastix >

typedef elx::TransformBase< TElastix > elastix::AdvancedBSplineTransform< TElastix >::Superclass2

Definition at line 124 of file elxAdvancedBSplineTransform.h.

Constructor & Destructor Documentation

◆ AdvancedBSplineTransform() [1/2]

template<class TElastix >

elastix::AdvancedBSplineTransform< TElastix >::AdvancedBSplineTransform ( )

protected

The constructor.

◆ ~AdvancedBSplineTransform()

template<class TElastix >

virtual elastix::AdvancedBSplineTransform< TElastix >::~AdvancedBSplineTransform ( )

inlineprotectedvirtual

The destructor.

Definition at line 295 of file elxAdvancedBSplineTransform.h.

◆ AdvancedBSplineTransform() [2/2]

template<class TElastix >

elastix::AdvancedBSplineTransform< TElastix >::AdvancedBSplineTransform ( const Self & )

private

The private constructor.

Member Function Documentation

◆ BeforeAll()

template<class TElastix >

virtual int elastix::AdvancedBSplineTransform< TElastix >::BeforeAll ( void )

virtual

Execute stuff before anything else is done:

Initialize the right BSplineTransform.
Initialize the right grid schedule computer.

Reimplemented from elastix::BaseComponent.

◆ BeforeEachResolution()

template<class TElastix >

virtual void elastix::AdvancedBSplineTransform< TElastix >::BeforeEachResolution ( void )

virtual

Execute stuff before each new pyramid resolution:

In the first resolution call InitializeTransform().
In next resolutions upsample the B-spline grid if necessary (so, call IncreaseScale())

Reimplemented from elastix::BaseComponent.

◆ BeforeRegistration()

template<class TElastix >

virtual void elastix::AdvancedBSplineTransform< TElastix >::BeforeRegistration ( void )

virtual

Execute stuff before the actual registration:

Create an initial B-spline grid.
Create initial registration parameters.
PrecomputeGridInformation Initially, the transform is set to use a 1x1x1 grid, with deformation (0,0,0). In the method BeforeEachResolution() this will be replaced by the right grid size. This seems not logical, but it is required, since the registration class checks if the number of parameters in the transform is equal to the number of parameters in the registration class. This check is done before calling the BeforeEachResolution() methods.

Reimplemented from elastix::BaseComponent.

◆ CreateTransformParametersMap()

template<class TElastix >

virtual void elastix::AdvancedBSplineTransform< TElastix >::CreateTransformParametersMap	(	const ParametersType &	param,
		ParameterMapType *	paramsMap
	)		const

virtual

Function to create transform-parameters map. Creates the TransformParametersmap as a vector and if wanted also as a deformation field.

Reimplemented from elastix::TransformBase< TElastix >.

◆ elxClassNameMacro()

template<class TElastix >

elastix::AdvancedBSplineTransform< TElastix >::elxClassNameMacro ( "BSplineTransform" )

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "BSplineTransform")

◆ GetClassName()

template<class TElastix >

virtual const char* elastix::AdvancedBSplineTransform< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::TransformBase< TElastix >.

◆ IncreaseScale()

template<class TElastix >

virtual void elastix::AdvancedBSplineTransform< TElastix >::IncreaseScale ( void )

virtual

Method to increase the density of the B-spline grid.

Determine the new B-spline coefficients that describe the current deformation field.
Set these coefficients as InitialParametersOfNextLevel in the registration object. Called by BeforeEachResolution().

◆ InitializeBSplineTransform()

template<class TElastix >

unsigned int elastix::AdvancedBSplineTransform< TElastix >::InitializeBSplineTransform ( )

private

Initialize the right B-spline transform based on the spline order and periodicity.

◆ InitializeTransform()

template<class TElastix >

virtual void elastix::AdvancedBSplineTransform< TElastix >::InitializeTransform ( void )

virtual

Method to set the initial B-spline grid and initialize the parameters (to 0).

Define the initial grid region, origin and spacing, using the precomputed grid information.
Set the initial parameters to zero and set then as InitialParametersOfNextLevel in the registration object. Called by BeforeEachResolution().

◆ itkStaticConstMacro()

template<class TElastix >

elastix::AdvancedBSplineTransform< TElastix >::itkStaticConstMacro	(	SpaceDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension
	)

Dimension of the fixed image.

◆ New()

template<class TElastix >

static Pointer elastix::AdvancedBSplineTransform< TElastix >::New ( )

static

Method for creation through the object factory.

◆ operator=()

template<class TElastix >

void elastix::AdvancedBSplineTransform< TElastix >::operator= ( const Self & )

private

The private copy constructor.

◆ PreComputeGridInformation()

template<class TElastix >

virtual void elastix::AdvancedBSplineTransform< TElastix >::PreComputeGridInformation ( void )

protectedvirtual

Read user-specified grid spacing and call the itkGridScheduleComputer.

◆ ReadFromFile()

template<class TElastix >

virtual void elastix::AdvancedBSplineTransform< TElastix >::ReadFromFile ( void )

virtual

Function to read transform-parameters from a file.

Reimplemented from elastix::TransformBase< TElastix >.

◆ SetOptimizerScales()

template<class TElastix >

virtual void elastix::AdvancedBSplineTransform< TElastix >::SetOptimizerScales ( const unsigned int edgeWidth )

virtual

Set the scales of the edge B-spline coefficients to zero.

◆ WriteToFile()

template<class TElastix >

virtual void elastix::AdvancedBSplineTransform< TElastix >::WriteToFile ( const ParametersType & param ) const

virtual

Function to write transform-parameters to a file.

Reimplemented from elastix::TransformBase< TElastix >.

Field Documentation

◆ m_BSplineTransform

template<class TElastix >

BSplineTransformBasePointer elastix::AdvancedBSplineTransform< TElastix >::m_BSplineTransform

private

Private variables.

Definition at line 308 of file elxAdvancedBSplineTransform.h.

◆ m_Cyclic

template<class TElastix >

bool elastix::AdvancedBSplineTransform< TElastix >::m_Cyclic

private

Definition at line 314 of file elxAdvancedBSplineTransform.h.

◆ m_GridScheduleComputer

template<class TElastix >

GridScheduleComputerPointer elastix::AdvancedBSplineTransform< TElastix >::m_GridScheduleComputer

private

Definition at line 309 of file elxAdvancedBSplineTransform.h.

◆ m_GridUpsampler

template<class TElastix >

GridUpsamplerPointer elastix::AdvancedBSplineTransform< TElastix >::m_GridUpsampler

private

Definition at line 310 of file elxAdvancedBSplineTransform.h.

◆ m_SplineOrder

template<class TElastix >

unsigned int elastix::AdvancedBSplineTransform< TElastix >::m_SplineOrder

private

Variables to remember order and periodicity of B-spline transform.

Definition at line 313 of file elxAdvancedBSplineTransform.h.

Detailed Description

template<class TElastix> class elastix::AdvancedBSplineTransform< TElastix >

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ BSplineTransformBasePointer

◆ BSplineTransformBaseType

◆ BSplineTransformCubicType

◆ BSplineTransformLinearType

◆ BSplineTransformQuadraticType

◆ CombinationTransformType

◆ ConfigurationPointer

◆ ConfigurationType

◆ ConstPointer

◆ ContinuousIndexType

◆ CoordRepType

◆ CyclicBSplineTransformCubicType

◆ CyclicBSplineTransformLinearType

◆ CyclicBSplineTransformQuadraticType

◆ CyclicGridScheduleComputerType

◆ DirectionType

◆ ElastixPointer

◆ ElastixType

◆ FixedImageType

◆ GridScheduleComputerPointer

◆ GridScheduleComputerType

◆ GridScheduleType

◆ GridUpsamplerPointer

◆ GridUpsamplerType

◆ ImagePointer

◆ ImageType

◆ IndexType

◆ InputCovariantVectorType

◆ InputPointType

◆ InputVectorType

◆ InputVnlVectorType

◆ ITKBaseType

◆ JacobianType

◆ MovingImageType

◆ NumberOfParametersType

◆ OriginType

◆ OutputCovariantVectorType

◆ OutputPointType

◆ OutputVectorType

◆ OutputVnlVectorType

◆ ParameterIndexArrayType

◆ ParameterMapType

◆ ParametersType

◆ PixelType

◆ Pointer

◆ RegionType

◆ RegistrationPointer

◆ RegistrationType

◆ ScalarType

◆ Self

◆ SizeType

◆ SpacingType

◆ Superclass1

◆ Superclass2

Constructor & Destructor Documentation

◆ AdvancedBSplineTransform() [1/2]

◆ ~AdvancedBSplineTransform()

◆ AdvancedBSplineTransform() [2/2]

Member Function Documentation

◆ BeforeAll()

◆ BeforeEachResolution()

◆ BeforeRegistration()

◆ CreateTransformParametersMap()

◆ elxClassNameMacro()

◆ GetClassName()

◆ IncreaseScale()

◆ InitializeBSplineTransform()

◆ InitializeTransform()

◆ itkStaticConstMacro()

◆ New()

template<class TElastix>
class elastix::AdvancedBSplineTransform< TElastix >