##fileformat=VCFv4.1
##fileDate=20150902
##fileUTCtime=2015-09-02T17:01:34
##source="tvc 5.0-0 (a074b60-acc25d6) - Torrent Variant Caller"
##basecallerVersion="4.0-6/76303"
##tmapVersion="4.0.6 (76303) (201310301826)"
##reference=/tmp/tmp.mPbJY9f8yr/tvc-5.0.0-Ubuntu_10.04_x86_64-binary/share/TVC/examples/example1/reference.fasta
##phasing=none
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=HS,Number=0,Type=Flag,Description="Indicate it is at a hot spot">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
##INFO=<ID=RO,Number=1,Type=Integer,Description="Reference allele observations">
##INFO=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observations">
##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
##INFO=<ID=SAF,Number=A,Type=Integer,Description="Alternate allele observations on the forward strand">
##INFO=<ID=SAR,Number=A,Type=Integer,Description="Alternate allele observations on the reverse strand">
##INFO=<ID=FDP,Number=1,Type=Integer,Description="Flow Evaluator read depth at the locus">
##INFO=<ID=FRO,Number=1,Type=Integer,Description="Flow Evaluator Reference allele observations">
##INFO=<ID=FAO,Number=A,Type=Integer,Description="Flow Evaluator Alternate allele observations">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency based on Flow Evaluator observation counts">
##INFO=<ID=QD,Number=1,Type=Float,Description="QualityByDepth as 4*QUAL/FDP (analogous to GATK)">
##INFO=<ID=FSRF,Number=1,Type=Integer,Description="Flow Evaluator Reference observations on the forward strand">
##INFO=<ID=FSRR,Number=1,Type=Integer,Description="Flow Evaluator Reference observations on the reverse strand">
##INFO=<ID=FSAF,Number=A,Type=Integer,Description="Flow Evaluator Alternate allele observations on the forward strand">
##INFO=<ID=FSAR,Number=A,Type=Integer,Description="Flow Evaluator Alternate allele observations on the reverse strand">
##INFO=<ID=FXX,Number=1,Type=Float,Description="Flow Evaluator failed read ratio">
##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
##INFO=<ID=HRUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
##INFO=<ID=FR,Number=.,Type=String,Description="Reason why the variant was filtered.">
##INFO=<ID=RBI,Number=A,Type=Float,Description="Distance of bias parameters from zero.">
##INFO=<ID=FWDB,Number=A,Type=Float,Description="Forward strand bias in prediction.">
##INFO=<ID=REVB,Number=A,Type=Float,Description="Reverse strand bias in prediction.">
##INFO=<ID=REFB,Number=A,Type=Float,Description="Reference Hypothesis bias in prediction.">
##INFO=<ID=VARB,Number=A,Type=Float,Description="Variant Hypothesis bias in prediction.">
##INFO=<ID=SSSB,Number=A,Type=Float,Description="Strand-specific strand bias for allele.">
##INFO=<ID=SSEN,Number=A,Type=Float,Description="Strand-specific-error prediction on negative strand.">
##INFO=<ID=SSEP,Number=A,Type=Float,Description="Strand-specific-error prediction on positive strand.">
##INFO=<ID=STB,Number=A,Type=Float,Description="Strand bias in variant relative to reference.">
##INFO=<ID=STBP,Number=A,Type=Float,Description="Pval of Strand bias in variant relative to reference.">
##INFO=<ID=PB,Number=A,Type=Float,Description="Bias of relative variant position in reference reads versus variant reads. Equals Mann-Whitney U rho statistic P(Y>X)+0.5P(Y=X)">
##INFO=<ID=PBP,Number=A,Type=Float,Description="Pval of relative variant position in reference reads versus variant reads.  Related to GATK ReadPosRankSumTest">
##INFO=<ID=MLLD,Number=A,Type=Float,Description="Mean log-likelihood delta per read.">
##FILTER=<ID=NOCALL,Description="Generic filter. Filtering details stored in FR info tag.">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
##FORMAT=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
##FORMAT=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
##FORMAT=<ID=SAF,Number=A,Type=Integer,Description="Alternate allele observations on the forward strand">
##FORMAT=<ID=SAR,Number=A,Type=Integer,Description="Alternate allele observations on the reverse strand">
##FORMAT=<ID=FDP,Number=1,Type=Integer,Description="Flow Evaluator Read Depth">
##FORMAT=<ID=FRO,Number=1,Type=Integer,Description="Flow Evaluator Reference allele observation count">
##FORMAT=<ID=FAO,Number=A,Type=Integer,Description="Flow Evaluator Alternate allele observation count">
##FORMAT=<ID=AF,Number=A,Type=Float,Description="Allele frequency based on Flow Evaluator observation counts">
##FORMAT=<ID=FSRF,Number=1,Type=Integer,Description="Flow Evaluator reference observations on the forward strand">
##FORMAT=<ID=FSRR,Number=1,Type=Integer,Description="Flow Evaluator reference observations on the reverse strand">
##FORMAT=<ID=FSAF,Number=A,Type=Integer,Description="Flow Evaluator Alternate allele observations on the forward strand">
##FORMAT=<ID=FSAR,Number=A,Type=Integer,Description="Flow Evaluator Alternate allele observations on the reverse strand">
##FORMAT=<ID=AF,Number=A,Type=Float,Description="Allele frequency based on Flow Evaluator observation counts">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	85
ABL1	951	.	C	A	1814.52	PASS	AF=0.878788;AO=347;DP=398;FAO=348;FDP=396;FR=.,REALIGNEDx0.8772;FRO=48;FSAF=85;FSAR=263;FSRF=9;FSRR=39;FWDB=-0.0281514;FXX=0.00751861;HRUN=1;LEN=1;MLLD=86.0046;QD=18.3284;RBI=0.0331135;REFB=0.000558206;REVB=0.0174357;RO=51;SAF=84;SAR=263;SRF=9;SRR=42;SSEN=0;SSEP=0;SSSB=0.0219991;STB=0.509406;STBP=0.4;TYPE=snp;VARB=-0.000446267	GT:GQ:DP:FDP:RO:FRO:AO:FAO:AF:SAR:SAF:SRF:SRR:FSAR:FSAF:FSRF:FSRR	1/1:52:398:396:51:48:347:348:0.878788:263:84:9:42:263:85:9:39
