#ifndef _EXCLUDE_
#define _EXCLUDE_

#include <admutils.h>
#include <mcio.h>
#include <stdio.h>

/*  file name parameter : xregionname */
/*  HW filter parameter : nhwfilter (-1 means no-filter) */
/*  maximum number of regions : 1000
 closed intervals in physical position include endpoints */
/*  read file and set ignore flag for SNPs */
void
excluderegions (char *xregionname, SNP **snps, int nsnps,
                char *deletesnpoutname);
void
hwfilter (SNP **snps, int nsnps, int nindiv, double nhwfilter,
          char *deletesnpoutname);

#endif
